BixBench current item

bix-6-q4

Question

What is the Spearman correlation coefficient between the replicate MAGeCK P-values for chronic round 1?

Accepted answer
(0.001,0.09)
Domain
general

Comparison

Pass counts and token totals across the same three replicates.

AgentGalaxy-API codeOpen-ended code
Codex GPT-5.53/3
replicate 1 replicate 2 replicate 3
5.66M total
3/3
replicate 1 replicate 2 replicate 3
503.6K total
Codex GPT-5.6 Sol3/3
replicate 1 replicate 2 replicate 3
6.44M total
3/3
replicate 1 replicate 2 replicate 3
501.7K total
Codex GPT-5.6 Luna3/3
replicate 1 replicate 2 replicate 3
18.74M total
3/3
replicate 1 replicate 2 replicate 3
399.1K total
DeepSeek V4 Pro via Codex3/3
replicate 1 replicate 2 replicate 3
8.87M total
3/3
replicate 1 replicate 2 replicate 3
476.4K total
DeepSeek V4 Pro via Claude Codesuperseded3/3
replicate 1 replicate 2 replicate 3
5.31M total
3/3
replicate 1 replicate 2 replicate 3
760.8K total

Execution condition

Galaxy-API code with skills

Codex GPT-5.5

3 primary replicates
Codex GPT-5.5

replicate 1

passUDT + standard tools
Answer0.02097098108581123
Workflow
Excel to tabularSelect columnsSpearman correlationRename columnGalaxy UDTSciPy
Total tokens
2.60M
Output
14.8K
Codex GPT-5.5

replicate 2

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationReplace column values
Total tokens
1.73M
Output
7.4K
Codex GPT-5.5

replicate 3

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsRemove headerSpearman correlation
Total tokens
1.33M
Output
6.4K

Codex GPT-5.6 Sol

3 primary replicates
Codex GPT-5.6 Sol

replicate 1

pass
Answer0.020970981085811226
Workflow
Excel to tabularTp Cut ToolSelect columnsSpearman correlationRegex1
Total tokens
1.69M
Output
10.5K
Codex GPT-5.6 Sol

replicate 2

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsReplace textSpearman correlationRemove headerAdd Line To File
Total tokens
2.21M
Output
8.4K
Codex GPT-5.6 Sol

replicate 3

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationTp Find And ReplaceSelect trailing rowsAdd Line To File
Total tokens
2.54M
Output
9.4K

Codex GPT-5.6 Luna

3 primary replicates
Codex GPT-5.6 Luna

replicate 1

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationRegexcolumn1Rename column
Total tokens
9.05M
Output
29.1K
Codex GPT-5.6 Luna

replicate 2

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsRename columnFilter TabularSpearman correlationTp Grep Tool
Total tokens
5.98M
Output
22.8K
Codex GPT-5.6 Luna

replicate 3

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationRename columnReplace text
Total tokens
3.71M
Output
23.3K

DeepSeek V4 Pro via Codex

3 primary replicates
DeepSeek V4 Pro via Codex

replicate 1

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationReplace textRemove header
Total tokens
3.83M
Output
24.1K
DeepSeek V4 Pro via Codex

replicate 2

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationTp Find And Replace
Total tokens
2.39M
Output
14.8K
DeepSeek V4 Pro via Codex

replicate 3

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationReplace text
Total tokens
2.65M
Output
16.7K

DeepSeek V4 Pro via Claude CodeSuperseded

3 primary replicates
DeepSeek V4 Pro via Claude Code

replicate 1

passUDT + standard tools
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationGalaxy UDTSciPy
Total tokens
2.52M
Output
22.4K
DeepSeek V4 Pro via Claude Code

replicate 2

pass
Answer0.020971
Workflow
Spearman correlation
Total tokens
1.36M
Output
12.5K
DeepSeek V4 Pro via Claude Code

replicate 3

pass
Answer0.020970981085811226
Workflow
Excel to tabularSelect columnsSpearman correlationReplace textSelect trailing rows
Total tokens
1.43M
Output
14.7K

Execution condition

Open-ended code with skills

Codex GPT-5.5

3 primary replicates
Codex GPT-5.5

replicate 1

pass
Answer0.02097098108581123
Workflow
Local analysisSciPySpearman correlation
Total tokens
178.0K
Output
3.1K
Codex GPT-5.5

replicate 2

pass
Answer0.020970981085811229
Workflow
Local analysisSciPySpearman correlation
Total tokens
153.4K
Output
3.3K
Codex GPT-5.5

replicate 3

pass
Answer0.020970981085811229
Workflow
Local analysisSciPySpearman correlation
Total tokens
172.2K
Output
3.4K

Codex GPT-5.6 Sol

3 primary replicates
Codex GPT-5.6 Sol

replicate 1

pass
Answer0.02097098108581123
Workflow
Local analysis
Total tokens
152.7K
Output
2.9K
Codex GPT-5.6 Sol

replicate 2

pass
Answer0.02097098108581123
Workflow
Local analysis
Total tokens
158.9K
Output
2.8K
Codex GPT-5.6 Sol

replicate 3

pass
Answer0.02097098108581123
Workflow
Local analysis
Total tokens
190.1K
Output
3.6K

Codex GPT-5.6 Luna

3 primary replicates
Codex GPT-5.6 Luna

replicate 1

pass
Answer0.0209709810858112
Workflow
Local analysis
Total tokens
145.6K
Output
3.8K
Codex GPT-5.6 Luna

replicate 2

pass
Answer0.0209709810858112
Workflow
Local analysis
Total tokens
131.7K
Output
3.5K
Codex GPT-5.6 Luna

replicate 3

pass
Answer0.036586792816685108
Workflow
Local analysis
Total tokens
121.8K
Output
2.9K

DeepSeek V4 Pro via Codex

3 primary replicates
DeepSeek V4 Pro via Codex

replicate 1

pass
Answer0.020970981085811226
Workflow
Local analysisSciPySpearman correlation
Total tokens
178.2K
Output
4.3K
DeepSeek V4 Pro via Codex

replicate 2

pass
Answer0.020970981085811
Workflow
Local analysisSciPySpearman correlation
Total tokens
116.8K
Output
2.9K
DeepSeek V4 Pro via Codex

replicate 3

pass
Answer0.02097098108581123
Workflow
Local analysisSciPySpearman correlationstatsmodels
Total tokens
181.3K
Output
4.5K

DeepSeek V4 Pro via Claude CodeSuperseded

3 primary replicates
DeepSeek V4 Pro via Claude Code

replicate 1

pass
Answer0.020971
Workflow
Local analysisSciPySpearman correlation
Total tokens
199.6K
Output
2.3K
DeepSeek V4 Pro via Claude Code

replicate 2

pass
Answer0.020970981085811
Workflow
Local analysisSciPySpearman correlation
Total tokens
298.2K
Output
2.2K
DeepSeek V4 Pro via Claude Code

replicate 3

pass
Answer0.020970981085811226
Workflow
Local analysisSciPySpearman correlationmean summary
Total tokens
263.0K
Output
2.0K

bix-6-q4 · October 2026 · three additional replicates

GPT-5.6 Sol · token optimization

Galaxy-API code, high reasoning, Fast service. Previous runs are retained above.

Open-ended code averaged 0.17M tokens; previous website Galaxy averaged 2.15M; the new Galaxy runs averaged 0.78M, or 4.69× Open-ended code. Each mean covers three replicates of this same task with GPT-5.6 Sol.

Cached input is already included in input tokens. Full nested tool/job evidence is in each HF run's galaxy_execution_records.tar.gz, with an accompanying member index.

Optimization overview and all 150 runs