BixBench current item

bix-18-q3

Question

What is the approximate percent reduction in mean colony area for the ΔlasR mutant compared to wildtype?

Accepted answer
(69,72)
Domain
general

Comparison

Pass counts and token totals across the same three replicates.

AgentGalaxy-API codeOpen-ended code
Codex GPT-5.53/3
replicate 1 replicate 2 replicate 3
4.11M total
3/3
replicate 1 replicate 2 replicate 3
187.7K total
Codex GPT-5.6 Sol3/3
replicate 1 replicate 2 replicate 3
3.04M total
3/3
replicate 1 replicate 2 replicate 3
245.7K total
Codex GPT-5.6 Luna3/3
replicate 1 replicate 2 replicate 3
11.11M total
3/3
replicate 1 replicate 2 replicate 3
240.0K total
DeepSeek V4 Pro via Codex3/3
replicate 1 replicate 2 replicate 3
3.88M total
3/3
replicate 1 replicate 2 replicate 3
371.2K total
DeepSeek V4 Pro via Claude Codesuperseded3/3
replicate 1 replicate 2 replicate 3
3.35M total
3/3
replicate 1 replicate 2 replicate 3
352.5K total

Execution condition

Galaxy-API code with skills

Codex GPT-5.5

3 primary replicates
Codex GPT-5.5

replicate 1

pass
Answer71%
Workflow
Datamash summaryCsv To TabularMatch rowsSummary statistics
Total tokens
2.07M
Output
8.1K
Codex GPT-5.5

replicate 2

pass
Answer71%
Workflow
Csv To TabularDatamash summarycolony morphology summary
Total tokens
1.20M
Output
6.7K
Codex GPT-5.5

replicate 3

pass
Answer71.0%
Workflow
Csv To TabularGroup and aggregateRemove header
Total tokens
834.3K
Output
6.2K

Codex GPT-5.6 Sol

3 primary replicates
Codex GPT-5.6 Sol

replicate 1

pass
Answer71%
Workflow
Csv To TabularDatamash summaryMatch rowsSummary statisticscolony morphology summarymean summary
Total tokens
1.60M
Output
9.9K
Codex GPT-5.6 Sol

replicate 2

pass
Answer71%
Workflow
Datamash summarycolony morphology summarymean summary
Total tokens
720.5K
Output
5.7K
Codex GPT-5.6 Sol

replicate 3

pass
Answer71%
Workflow
Csv To TabularGroup and aggregatecolony morphology summary
Total tokens
724.5K
Output
4.4K

Codex GPT-5.6 Luna

3 primary replicates
Codex GPT-5.6 Luna

replicate 1

pass
Answer71%
Workflow
Filter TabularRemove headerGroup and aggregateDatamash TransposeAdd derived columncolony morphology summary
Total tokens
3.13M
Output
20.2K
Codex GPT-5.6 Luna

replicate 2

pass
Answer71.0%
Workflow
Csv To TabularFilter TabularDatamash summarycolony morphology summary
Total tokens
3.97M
Output
18.5K
Codex GPT-5.6 Luna

replicate 3

pass
Answer71%
Workflow
Csv To TabularDatamash summarySelect columnsmore stepsSummary statisticscolony morphology summary
Total tokens
4.02M
Output
24.8K

DeepSeek V4 Pro via Codex

3 primary replicates
DeepSeek V4 Pro via Codex

replicate 1

pass
Answer71%
Workflow
Datamash summaryFilter rowsSummary statisticscolony morphology summary
Total tokens
1.85M
Output
19.2K
DeepSeek V4 Pro via Codex

replicate 2

pass
Answer71%
Workflow
Datamash summary
Total tokens
320.3K
Output
3.2K
DeepSeek V4 Pro via Codex

replicate 3

pass
Answer71%
Workflow
Group and aggregateDatamash summarycolony morphology summary
Total tokens
1.71M
Output
13.0K

DeepSeek V4 Pro via Claude CodeSuperseded

3 primary replicates
DeepSeek V4 Pro via Claude Code

replicate 1

pass
Answer71%
Workflow
Group and aggregatecolony morphology summary
Total tokens
1.34M
Output
11.3K
DeepSeek V4 Pro via Claude Code

replicate 2

pass
Answer71%
Workflow
Group and aggregateRemove headercolony morphology summary
Total tokens
1.12M
Output
8.3K
DeepSeek V4 Pro via Claude Code

replicate 3

pass
Answer71%
Workflow
Datamash summarycolony morphology summary
Total tokens
897.3K
Output
8.9K

Execution condition

Open-ended code with skills

Codex GPT-5.5

3 primary replicates
Codex GPT-5.5

replicate 1

pass
Answer71%
Workflow
Local analysismean summary
Total tokens
62.9K
Output
706
Codex GPT-5.5

replicate 2

pass
Answer71%
Workflow
Local analysismean summary
Total tokens
46.6K
Output
604
Codex GPT-5.5

replicate 3

pass
Answer71%
Workflow
Local analysismean summary
Total tokens
78.1K
Output
625

Codex GPT-5.6 Sol

3 primary replicates
Codex GPT-5.6 Sol

replicate 1

pass
Answer71%
Workflow
Local analysis
Total tokens
72.0K
Output
681
Codex GPT-5.6 Sol

replicate 2

pass
Answer71%
Workflow
Local analysis
Total tokens
86.8K
Output
687
Codex GPT-5.6 Sol

replicate 3

pass
Answer71%
Workflow
Local analysis
Total tokens
86.8K
Output
693

Codex GPT-5.6 Luna

3 primary replicates
Codex GPT-5.6 Luna

replicate 1

pass
Answer71%
Workflow
Local analysis
Total tokens
80.7K
Output
1.3K
Codex GPT-5.6 Luna

replicate 2

pass
Answer71%
Workflow
Local analysis
Total tokens
93.3K
Output
1.1K
Codex GPT-5.6 Luna

replicate 3

pass
Answer71%
Workflow
Local analysis
Total tokens
66.0K
Output
983

DeepSeek V4 Pro via Codex

3 primary replicates
DeepSeek V4 Pro via Codex

replicate 1

pass
Answer71%
Workflow
Local analysismean summary
Total tokens
76.8K
Output
1.8K
DeepSeek V4 Pro via Codex

replicate 2

pass
Answer71%
Workflow
Local analysismean summary
Total tokens
121.4K
Output
2.6K
DeepSeek V4 Pro via Codex

replicate 3

pass
Answer71%
Workflow
Local analysismean summary
Total tokens
173.0K
Output
2.9K

DeepSeek V4 Pro via Claude CodeSuperseded

3 primary replicates
DeepSeek V4 Pro via Claude Code

replicate 1

pass
Answer70.99%
Workflow
Local analysis
Total tokens
117.3K
Output
1.1K
DeepSeek V4 Pro via Claude Code

replicate 2

pass
Answer71%
Workflow
Local analysis
Total tokens
117.6K
Output
1.2K
DeepSeek V4 Pro via Claude Code

replicate 3

pass
Answer71%
Workflow
Local analysis
Total tokens
117.6K
Output
1.2K

bix-18-q3 · October 2026 · three additional replicates

GPT-5.6 Sol · token optimization

Galaxy-API code, high reasoning, Fast service. Previous runs are retained above.

Open-ended code averaged 0.08M tokens; previous website Galaxy averaged 1.01M; the new Galaxy runs averaged 0.41M, or 4.97× Open-ended code. Each mean covers three replicates of this same task with GPT-5.6 Sol.

Cached input is already included in input tokens. Full nested tool/job evidence is in each HF run's galaxy_execution_records.tar.gz, with an accompanying member index.

Optimization overview and all 150 runs