Galaxy Learning and Modeling

GLEAM

No-code machine learning tools for the Galaxy computational workbench, spanning tabular modeling, image learning, and multimodal prediction.

Built for reproducible biomedical ML

Train, evaluate, and share models in Galaxy.

Accessible

Run machine learning workflows through Galaxy forms and histories without requiring local command-line setup.

Reproducible

Capture inputs, parameters, model artifacts, reports, metrics, and configuration files as Galaxy datasets.

Extensible

Use maintained wrappers and containerized runtimes that can be installed into public, institutional, or development Galaxy servers.

Workbench

GLEAM software tools

Galaxy Training Network

Hands-on GLEAM tutorials

Tabular Learner

Predict patient response to therapy using automated machine learning with clinical data

Train a tabular immunotherapy-response classifier, compare candidate models, and evaluate discrimination, calibration, and threshold behavior against published results.

Published
May 2025
Level
Intermediate
Time
1 hour

Image Learner

Skin lesion classification using computer vision models

Prepare a balanced HAM10000 subset, run Image Learner with a pretrained CaFormer deep learning backbone, and evaluate accuracy, weighted precision, recall, F1, and confusion patterns.

Published
January 2026
Level
Intermediate
Time
1 hour

Multimodal Learner

Head and neck cancer recurrence prediction using clinical and imaging data

Train a late-fusion model from clinical tabular fields, text columns, and CD3/CD8 image archives, then interpret ROC, PR, confusion matrix, calibration, and threshold-dependent metrics.

Published
March 2026
Level
Intermediate
Time
1 hour