Question
subtype.inflammation.q1.1.mtx.gz and subtype.inflammation.q1.2.mtx.gz contain raw scRNA counts matrices from retinal samples from two eyes of an individual (one per file, each column is a unique barcode that passes QC). subtype.inflammation.q1.genes.txt.gz is the list of common genes. One of the cell types is inflammed in one eye compared to the other. What is this cell type? Return only the name of the inflammed cell type from this list: astrocyte, microglial cell, RPE cell, cone cell, rod cell, horizontal cell, bipolar cell, RGC, T cells, macrophage, Schwann cell, Pericyte, B cell, fibroblast, muller glia cell, endothelial cell.
- Predicted answer
muller glia cellMost likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Single-cell
- Question style
- Synthetic/Augmented Data
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
Answermuller glia cell
WorkflowRetina subtype inflammation analysis→Retina matrix format diagnostic
Codex GPT-5.5
Replicate 2
Matches predictionUDT-only
Answermuller glia cell
WorkflowRetina marker diagnostic→Retina inflammation classifier→Retina glial validation
- Total tokens
- 548.2K
- Output
- 13.5K
Codex GPT-5.5
Replicate 3
Matches predictionUDT + standard tools
Answermuller glia cell
WorkflowRetina inflammation diagnostic→UDT copy probe→UDT copy probe python container→Remove Beginning1→Anndata Import→6 more tools
- Total tokens
- 4.3M
- Output
- 22.9K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionUDT-only
Answermuller glia cell
WorkflowGalaxy UDT→retina_inflammation→Retina inflammation→Retina inflammation joint analysis→Retina inflammation joint analysis v2→2 more tools
- Total tokens
- 2.9M
- Output
- 13.9K
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT + standard tools
Answermuller glia cell
WorkflowRetina inflammation marker diagnostic→Retina inflammation strict validation→Prepare combined retinal AnnData inputs→Anndata Import→Prepare combined retinal AnnData inputs corrected→5 more tools
- Total tokens
- 8.4M
- Output
- 25.7K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionUDT-only
Answermuller glia cell
WorkflowRetina inflammation marker diagnostics→Retina cell type inflammation full analysis→Retina inflammation marker-gate validation→Retina inflammation strict lineage validation
- Total tokens
- 3.3M
- Output
- 25.3K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionUDT + standard tools
Answermuller glia cell
WorkflowTp Text File With Recurring Lines→Convert Characters1→Nl→Select columns→Anndata Import→8 more tools
- Total tokens
- 25.1M
- Output
- 50.2K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
Answermuller glia cell
WorkflowScanpy Read 10X→Anndata Manipulate→Anndata Inspect→Scanpy Normalise Data→Scanpy Find Variable Genes→8 more tools
- Total tokens
- 14.2M
- Output
- 45.4K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionUDT-only
Answermuller glia cell
WorkflowProbe Scanpy Runtime→Retina Inflammation Diagnostic→Probe Install Cluster Runtime→Retina Inflammation Diagnostic Full→Retina Marker Probe→1 more tools
- Total tokens
- 6.4M
- Output
- 41.4K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionUDT-only
Answermuller glia cell
WorkflowRetinal inflammation cell-type diagnostic→Retinal inflammation refined validation→Retinal inflammation refined validation v2→Retinal inflammation final balanced validation
- Total tokens
- 1.6M
- Output
- 37.5K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionUDT-only
Answermuller glia cell
WorkflowRetinal inflammation diagnostic→Retinal inflammation focused cell analysis→Retinal inflammation anchor validation→Retinal inflammation CCL5 identity validation
- Total tokens
- 1.9M
- Output
- 43.5K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionUDT-only
Answermuller glia cell
WorkflowRetinal Marker Scan→Retinal Inflammation Diagnostic→Retinal Inflammation Diagnostic Assignment Check→Retinal Inflammation Diagnostic Anchor Check→Retinal Inflammation Anchor Focus→5 more tools
- Total tokens
- 4.0M
- Output
- 52.0K