spatial-sim-q1

Question

You are given a set of single cell transcriptomic data and Visium spatial transcriptomic data (spatial.sim.tar.gz). The single cell counts matrix is found at spatial_q_sc_counts.csv, and accompanying cell type metadata is found at spatial_q_sc_metadata.csv. Spatial count data is found at spatial_q_matrix.mtx.gz, gene counts are found at spatial_q_features.tsv.gz, and are found at spot barcodes spatial_q_barcodes.tsv.gz. Finally scale factors are found at spatial_q_scalefactors_json.json, high and low resolution tissue images are found at spatial_q_tissue_hires_image.png and patial_q_tissue_hires_image.png respectively, and tissue positions are found at spatial_q_tissue_positions.csv. The spot-based data is comprised entirely of cell types found in the single cell data. Can you tell me what cell type or cell types are included in spot ID Spot_710-1? Please list these separated by commas in alphabetical order. Expected answer format: Endothelial,Macrophage.

Predicted answer

B_Cell,Endothelial,MacrophageMost likely answer for this question; not uniquely determined from submitted scores.

Domain

Spatial

Question style

Synthetic/Augmented Data

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.