reverse-encode-q1

Question

For an ENCODE DNase-seq experiment, I started from the filtered BAM produced by the ENCODE4 v3.0.0-alpha.2 (GRCh38/hg38) pipeline. If the experiment had multiple replicates, I pooled all replicate BAMs by concatenating reads (i.e., merged at the read level) before downstream processing. I then applied an additional mapping-quality filter MAPQ ≥ 30, converted alignments to BED using bedtools bamToBed, and computed read counts in fixed 10 kb hg38 genomic bins. I then normalized the counts to sum to 1e6. The resulting binned track for one experiment is reverse.encode.q1.tsv.gz, but I lost the ENCODE experiment accession. Identify the originating ENCODE experiment accession (format ENCSR…) from which this file was derived.

Inferred answer

ENCSR597URKUniquely inferred from submitted scores.

Domain

Epigenomics

Question style

Metadata Recovery

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.