promoter-sequence-retrieval-q1

Question

Using the Ensembl GRCz11 genome assembly and Ensembl gene annotation, what is the DNA sequence of the promoter region of the zebrafish gene shha? Define the promoter as the region spanning positions −500 to +100 relative to the transcription start site (TSS) of the canonical transcript, where the TSS is position 0, negative positions are upstream, and positive positions are downstream, yielding a 601 bp sequence. Return the sequence in 5′ to 3′ orientation on the sense strand (reverse complement the genomic sequence if the gene is on the − strand).

Predicted answer

TTTACTGCAGAAAGCACAATAAATTTGATGTAAGATCTGAGTGTTTTTAAAACACAAAAAACTAATTCGTCTGGCTTCTGTAACCGAGTTGTTCAGGTTAGAGGCTGATGGGACAACAAGTGATCAATCTGACAGGAATGTGACTGAAGCGATTAAAAAGTTGTCATATTTGGAAACGCTGTTATTCTGTGATTAATTCGGGTGATGGTGAACGCGCACATTCCGCACTTGCTGTGATAAATGAAGTTTCGAAAGTTGTATAATTGATTCAACCTTACGTGCAGCAACGCAAATGACTTGAGAAATAATGGTTCATTAGCGGGTCACACACGGATGTAAGAAAGTGAGCACACATGCACGTCGCAGCCTCACACAGACAGCAGTGGGAGAAACTGATGCGTTCACATCTCACCGCGTCCCTCCCCTGAAACCCACCTTCTTTAAAGGTTTTTTGCGCGTCTGTTTTGTGGGATAACATCAGAAGTGTTCGTCCCGTCGAGCCAATCAGGTCCCTCCCTACCTCAGATCGCAGCTATAATACATAGGAGTAAAGAGGCTTCTCGCATTAAGTGGCTGTGGCTTGAAGTAACGTTGTGATTTCMost likely answer for this question; not uniquely determined from submitted scores.

Domain

Genomics

Question style

Routine Analysis

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.