Question
The file mystery.peak.set.q1.bed.gz contains genomic intervals for six distinct peak sets (S1–S6), all mapped to the hg38 reference genome. Each peak set represents accessible chromatin regions identified under different experimental conditions. One of these peak sets corresponds to a chromatin accessibility pattern that is strongly depleted in large public collections of unperturbed human samples, including both primary tissues and established cell lines. Identify which peak set (S1–S6) shows this depletion and report its name.
- Predicted answer
S5Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Epigenomics
- Question style
- Metadata Recovery
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
AnswerS5
WorkflowMystery peak public catalog overlap→Mystery peak DHS depletion check
Codex GPT-5.5
Replicate 2
Matches predictionUDT + standard tools
AnswerS5
WorkflowDHS depletion analysis→DHS depletion analysis v2→UDT render probe→UDT echo probe→Grep→2 more tools
- Total tokens
- 1.4M
- Output
- 14.4K
Codex GPT-5.5
Replicate 3
Matches predictionUDT + standard tools
AnswerS5
WorkflowPeak set depletion overlap analysis→Peak set depletion overlap analysis v2→UDT render probe
- Total tokens
- 6.4M
- Output
- 24.6K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionStandard tools only
AnswerS5
WorkflowUcsc Bigbedtobed→Bedtools Intersectbed→Select columns→Datamash Ops→Sort rows→2 more tools
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT-only
AnswerS5
WorkflowPeak-set diagnostics Q1→ENCODE DHS Index peak-set overlap Q1
- Total tokens
- 3.8M
- Output
- 11.8K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionStandard tools only
AnswerS5
WorkflowCount1→Ucsc Bigbedtobed→Bedtools Intersectbed→Show Tail1→Converter Gz To Uncompressed→2 more tools
- Total tokens
- 3.8M
- Output
- 10.0K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
AnswerS5
WorkflowBedtools Intersectbed→Bedtools Groupbybed→Tp Sort Header Tool
- Total tokens
- 5.0M
- Output
- 31.2K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
AnswerS5
WorkflowUpload1→Data Fetch→Ucsc Bigbedtobed→Bedtools Intersectbed→Count1→2 more tools
- Total tokens
- 3.2M
- Output
- 17.5K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
AnswerS5
WorkflowBedtools Intersectbed→Bedtools Groupbybed→Sort rows
- Total tokens
- 2.3M
- Output
- 13.0K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionStandard tools only
AnswerS5
WorkflowDatamash Ops→Upload1→Bedtools Intersectbed→Bedtools Groupbybed→Join datasets→1 more tools
- Total tokens
- 18.8M
- Output
- 39.0K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionStandard tools only
AnswerS5
WorkflowCount1→Bedtools Intersectbed
- Total tokens
- 6.6M
- Output
- 23.7K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionStandard tools only
AnswerS5
WorkflowWc Gnu→Tp Split On Column→Upload1→Ucsc Bigbedtobed→Bedtools Intersectbed