Question
You are given two gzipped TSVs. Rows are features and columns are 8 pseudo-bulk cell populations (same 8 in both files). multiome.match.atac.rna.q1.rna.tsv.gz: RNA TPM (genes × populations). multiome.match.atac.rna.q1.atac.tsv.gz: ATAC 10kb-bin counts normalized to 1e6 (bins × populations). The ATAC columns have been permuted, but RNA columns are in the correct order. For each RNA column i (0-based), output the 0-based index of the matching ATAC column. Respond with a single semicolon-separated string with no spaces, length 8, e.g. 7;6;5;4;3;2;1;0.
- Predicted answer
5;1;4;0;6;3;7;2Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Epigenomics
- Question style
- Metadata Recovery
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMatch multiome RNA ATAC columns→Promoter match multiome RNA ATAC columns→Promoter centered match multiome RNA ATAC columns
Codex GPT-5.5
Replicate 2
RerunMatches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMatch multiome columns by similarity geometry→Match multiome columns by promoter bins
- Total tokens
- 506.8K
- Output
- 10.8K
Codex GPT-5.5
Replicate 3
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMultiome Column Match Diagnostic→Multiome Column Match Diagnostic v2→UDT Template Probe→UDT Template Probe v2→UDT Template Probe v3→1 more tools
- Total tokens
- 2.3M
- Output
- 21.2K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMatch RNA and ATAC pseudo-bulk populations
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowRNA ATAC population match diagnostic→Final validated RNA ATAC population match
- Total tokens
- 959.2K
- Output
- 11.4K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionUDT + standard tools
Answer5;1;4;0;6;3;7;2
WorkflowMultiome RNA ATAC population matching diagnostic→Regex1→Chipseeker→Filter Tabular→Group and aggregate→5 more tools
- Total tokens
- 17.7M
- Output
- 31.7K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowGene Activity Matching Diagnostic→Deviation Matching Diagnostic→Final RNA ATAC Column Match
- Total tokens
- 3.9M
- Output
- 42.2K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMatch Multiome Columns
- Total tokens
- 1.1M
- Output
- 20.0K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionUDT + standard tools
Answer5;1;4;0;6;3;7;2
WorkflowMatch columns diagnostic→Probe render→Match Columns Diag V2→Filter Tabular
- Total tokens
- 54.3M
- Output
- 129.9K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowPseudo-bulk Column Match Diagnostic→Pseudo-bulk Feature-wise Rank Match Diagnostic→Pseudo-bulk Genomic Column Match Diagnostic→Pseudo-bulk Genomic Build Check→Pseudo-bulk RNA-to-ATAC Column Match Final
- Total tokens
- 2.9M
- Output
- 35.3K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMultimodal Column Match Diagnostic→Streaming Multimodal Column Match Diagnostic→Gene Bin Multimodal Column Match Diagnostic→Gene Bin Multimodal Build Control→Gene Bin Column Match Final Diagnostic→1 more tools
- Total tokens
- 8.0M
- Output
- 47.8K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionUDT-only
Answer5;1;4;0;6;3;7;2
WorkflowMultiome Column Matching Diagnostic→Multiome Column Matching Robust Diagnostic→Upload1→Multiome Column Matching Genomic Diagnostic→Multiome Column Matching Cross Feature Diagnostic→1 more tools
- Total tokens
- 2.8M
- Output
- 46.4K