Question
Borzoi (Linder et al., doi:10.1038/s41588-024-02053-6) and Sei (Chen et al., doi:10.1038/s41588-022-01102-2) are both DNA sequence models trained to predict genomic assay outputs. Out of the Sei tracks that are linked to a specific Cistrome ID, how many tracks share provenance with any of the tracks in Borzoi? Round your answer to the nearest 100.
- Inferred answer
3600Uniquely inferred from submitted scores.
- Domain
- Epigenomics
- Question style
- Retrieval
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
IncorrectUDT-only
Answer1300
WorkflowSei Borzoi Provenance Match
- Total tokens
- 2.1M
- Output
- 9.5K
Codex GPT-5.5
Replicate 2
RerunIncorrectUDT-only
Answer1300
WorkflowCistrome overlap analysis for Sei and Borzoi→Cistrome old API overlap validation for Sei and Borzoi→Cistrome single keyword query
- Total tokens
- 2.5M
- Output
- 21.2K
Codex GPT-5.5
Replicate 3
IncorrectUDT + standard tools
Answer100
WorkflowInspect Sei and Borzoi source annotations→Inspect Sei and Borzoi source annotations v2→Inspect Sei and Borzoi source annotations v3→Minimal path render test→Minimal path render test v2→5 more tools
- Total tokens
- 7.0M
- Output
- 21.3K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
IncorrectUDT-only
Answer2,400
WorkflowSei Borzoi provenance diagnostic→Sei Borzoi exact provenance analysis→Sei Borzoi exact provenance analysis v2→Sei Borzoi provenance by Sei Cistrome records
- Total tokens
- 22.9M
- Output
- 29.8K
Codex GPT-5.6 Sol
Replicate 2
IncorrectUDT + standard tools
Answer2400
WorkflowSei Borzoi provenance diagnostic→Sei Borzoi provenance diagnostic v2→Sei Borzoi provenance diagnostic v3→UDT copy probe→Sei Borzoi provenance diagnostic v4→6 more tools
- Total tokens
- 16.2M
- Output
- 31.7K
Codex GPT-5.6 Sol
Replicate 3
IncorrectUDT-only
Answer2400
WorkflowBorzoi Sei provenance diagnostic→Borzoi Sei provenance diagnostic revised→Borzoi Sei shared provenance final count
- Total tokens
- 6.5M
- Output
- 16.7K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
IncorrectUDT-only
Answer1300
WorkflowSei Borzoi Provenance Compare→Sei Borzoi Provenance Compare v2
- Total tokens
- 6.4M
- Output
- 36.8K
Codex + DeepSeek-v4-pro-0813
Replicate 2
IncorrectUDT-only
Answer2400
WorkflowBorzoi Sei Cistrome Provenance Overlap→Borzoi Sei Cistrome Provenance Overlap v3→Borzoi Sei Cistrome Provenance Overlap v4
- Total tokens
- 22.0M
- Output
- 59.1K
Codex + DeepSeek-v4-pro-0813
Replicate 3
CorrectUDT-only
Answer3600
WorkflowProbe Cistrome API→Resolve Sei Cistrome IDs→Resolve Sei Cistrome IDs v2→Inspect Sei Cistrome Mapping→Resolve Borzoi Provenance→4 more tools
- Total tokens
- 14.4M
- Output
- 73.4K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
IncorrectUDT-only
Answer100
WorkflowTrack provenance diagnostic→Cistrome/Borzoi provenance overlap diagnostic→Final Sei/Borzoi provenance overlap
- Total tokens
- 7.1M
- Output
- 20.4K
Codex GPT-5.6 Luna
Replicate 2
IncorrectUDT + standard tools
Answer100
WorkflowXlsx2Tsv→Filter Tabular→Sei Borzoi provenance diagnostic→UDT render probe→UDT command probe→6 more tools
- Total tokens
- 36.1M
- Output
- 92.4K
Codex GPT-5.6 Luna
Replicate 3
IncorrectUDT + standard tools
Answer100
WorkflowTp Grep Tool→Upload1→Xlsx2Tsv→Sei Borzoi provenance probe→UDT render probe→6 more tools
- Total tokens
- 21.5M
- Output
- 61.3K