Question
Consider the MicroC data for H1 and HFF cells from the following paper: https://doi.org/10.1016/j.molcel.2020.03.003. In the sub-compartment containing the NANOG gene (chr12:7629950-7809597), there is a differential loop between the two samples. Report the position of the loop (on chr12) in the following format start;end, with start<end rounded to the nearest 20000 and no commas.
- Inferred answer
7720000;7800000Uniquely inferred from submitted scores.
- Domain
- Epigenomics
- Question style
- Retrieval
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
RerunCorrectUDT-only
Answer7720000;7800000
WorkflowNANOG Loop Diagnostic→NANOG Loop Final
- Total tokens
- 1.4M
- Output
- 15.3K
Codex GPT-5.5
Replicate 2
CorrectUDT + standard tools
Answer7720000;7800000
WorkflowNANOG HiC differential diagnostic→NANOG HiC differential diagnostic v2→NANOG HiC differential diagnostic v3→NANOG HiC differential diagnostic v4→UDT smoke echo→2 more tools
- Total tokens
- 6.2M
- Output
- 24.7K
Codex GPT-5.5
Replicate 3
CorrectUDT + standard tools
Answer7720000;7800000
WorkflowNANOG loop diagnostic→NANOG loop diagnostic v2→Filter Tabular
- Total tokens
- 1.7M
- Output
- 11.3K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectStandard tools only
Answer7720000;7800000
WorkflowFilter Tabular→Grep→Select columns→Subtract Query1
- Total tokens
- 4.1M
- Output
- 10.5K
Codex GPT-5.6 Sol
Replicate 2
CorrectUDT-only
Answer7720000;7800000
WorkflowMicro-C chr12 region diagnostic→Micro-C chr12 normalization diagnostic→Micro-C chr12 raw contact diagnostic→Micro-C chr12 isolated raw contact diagnostic→Rank chr12 Micro-C differential pixels→3 more tools
- Total tokens
- 3.6M
- Output
- 15.2K
Codex GPT-5.6 Sol
Replicate 3
CorrectUDT + standard tools
Answer7720000;7800000
WorkflowNANOG published dot-call diagnostic→Filter Tabular→NANOG differential Micro-C loop final
- Total tokens
- 4.5M
- Output
- 16.5K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
CorrectStandard tools only
Answer7720000;7800000
WorkflowNo Galaxy tool job recorded
- Total tokens
- 11.5M
- Output
- 28.1K
Codex + DeepSeek-v4-pro-0813
Replicate 2
CorrectStandard tools only
Answer7720000;7800000
WorkflowConverter Gz To Uncompressed→Filter rows→Add A Column1→Comp1
- Total tokens
- 8.7M
- Output
- 30.6K
Codex + DeepSeek-v4-pro-0813
Replicate 3
CorrectUDT + standard tools
Answer7720000;7800000
WorkflowInspect NANOG region→Inspect NANOG region v2→Probe Cat→Probe Cat Doc→Probe Cat Seq→8 more tools
- Total tokens
- 13.7M
- Output
- 53.8K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
CorrectStandard tools only
Answer7720000;7800000
WorkflowUpload1→Filter Tabular→Tp Grep Tool→Select columns→Comp1→1 more tools
- Total tokens
- 16.4M
- Output
- 38.4K
Codex GPT-5.6 Luna
Replicate 2
CorrectUDT + standard tools
Answer7720000;7800000
WorkflowFilter Tabular→Micro-C region candidates→Micro-C UDT render probe→Micro-C UDT command probe
- Total tokens
- 12.2M
- Output
- 40.9K
Codex GPT-5.6 Luna
Replicate 3
CorrectStandard tools only
Answer7720000;7800000
WorkflowFilter Tabular→Grep→Select columns→Comp1→Add A Column1
- Total tokens
- 6.3M
- Output
- 24.4K