Question
From the given GTF MANE.GRCh38.v1.3.refseq_genomic.gtf.gz, report the median 5' UTR, CDS, and 3' UTR lengths (use numpy median function, rounded down to nearest integer). Only consider MANE Select transcripts and those on standard chromosomes. Consider stop codon as part of CDS. Return a semicolon separated string with no space, e.g. "45;551;23".
- Inferred answer
133;1296;1050Uniquely inferred from submitted scores.
- Domain
- Transcriptomics
- Question style
- Routine Analysis
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
CorrectUDT-only
Answer133;1296;1050
WorkflowMANE UTR CDS lengths→MANE UTR CDS lengths v2→MANE UTR CDS lengths v3→MANE UTR CDS lengths v4
Codex GPT-5.5
Replicate 2
CorrectUDT + standard tools
Answer133;1296;1050
WorkflowMANE GTF Diagnostic→MANE GTF Diagnostic v2→UDT Echo Probe MANE→UDT Echo Probe MANE 2→UDT Echo Probe MANE 3→10 more tools
- Total tokens
- 7.9M
- Output
- 28.8K
Codex GPT-5.5
Replicate 3
RerunCorrectUDT-only
Answer133;1296;1050
WorkflowMANE GTF diagnostic→MANE length medians
- Total tokens
- 398.3K
- Output
- 7.1K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectUDT-only
Answer133;1296;1050
WorkflowSummarize MANE GTF UTR and CDS lengths→Calculate MANE GTF UTR and CDS medians→Calculate MANE GTF UTR and CDS medians with NumPy→Validated MANE GTF UTR and CDS medians→Final validated MANE GTF UTR and CDS medians
- Total tokens
- 2.3M
- Output
- 12.2K
Codex GPT-5.6 Sol
Replicate 2
CorrectUDT-only
Answer133;1296;1050
WorkflowMANE GTF diagnostic→MANE Select standard chromosome UTR CDS medians
- Total tokens
- 716.7K
- Output
- 8.6K
Codex GPT-5.6 Sol
Replicate 3
CorrectUDT + standard tools
Answer133;1296;1050
WorkflowMANE v1.3 transcript structure diagnostics→Tp Head Tool→Grep→Gtftobed12→MANE v1.3 BED12 UTR and CDS medians→7 more tools
- Total tokens
- 21.5M
- Output
- 34.7K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
CorrectUDT-only
Answer133;1296;1050
WorkflowMANE UTR Median→MANE UTR Median v2
- Total tokens
- 1.2M
- Output
- 17.9K
Codex + DeepSeek-v4-pro-0813
Replicate 2
CorrectUDT + standard tools
Answer133;1296;1050
WorkflowMANE UTR medians→MANE UTR medians v2→MANE UTR medians v3→Datamash Ops
- Total tokens
- 1.8M
- Output
- 23.1K
Codex + DeepSeek-v4-pro-0813
Replicate 3
RerunCorrectUDT + standard tools
Answer133;1296;1050
WorkflowFilter annotation→Convert transcripts to BED12→Feature-length calculation→Median summary
- Total tokens
- 15.8M
- Output
- 69.7K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
CorrectUDT + standard tools
Answer133;1296;1050
WorkflowMANE GTF inspection→Cat Multi Datasets→UDT routing probe→MANE GTF inspection refined→MANE length diagnostics→1 more tools
- Total tokens
- 13.3M
- Output
- 47.9K
Codex GPT-5.6 Luna
Replicate 2
CorrectUDT + standard tools
Answer133;1296;1050
WorkflowMANE GTF Diagnostic→MANE UDT Render Probe→MANE UDT Minimal Probe→MANE UDT Documentation Probe→Tp Head Tool→12 more tools
- Total tokens
- 25.0M
- Output
- 78.6K
Codex GPT-5.6 Luna
Replicate 3
CorrectUDT + standard tools
Answer133;1296;1050
WorkflowMANE GTF Probe→MANE GTF Probe v2→MANE Command Probe→Gff Filter By Attribute→Converter Gz To Uncompressed→8 more tools
- Total tokens
- 36.2M
- Output
- 94.2K