Question
From the supplementary data of the GEO accession GSE242423, for the D2 scRNA-seq matrix, retrieve the counts for SOX2 for barcode AAACCCAAGTCTTCGA-1.
- Predicted answer
20Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Single-cell
- Question style
- Retrieval
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
Answer20
WorkflowGSE242423 D2 SOX2 barcode count lookup
- Total tokens
- 300.3K
- Output
- 4.2K
Codex GPT-5.5
Replicate 2
Matches predictionUDT + standard tools
Answer20
WorkflowGSE242423 D2 SOX2 count lookup→GSE242423 D2 SOX2 count lookup v2→GSE242423 D2 SOX2 count lookup v3
- Total tokens
- 2.2M
- Output
- 15.2K
Codex GPT-5.5
Replicate 3
Matches predictionUDT + standard tools
Answer20
WorkflowGEO D2 scRNA Matrix Diagnostic→GEO D2 scRNA Matrix Diagnostic v2→Converter Gz To Uncompressed→Nl→Grep→1 more tools
- Total tokens
- 1.9M
- Output
- 9.9K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionStandard tools only
Answer20
WorkflowNl→Tp Grep Tool→Show Beginning1→Wc Gnu
- Total tokens
- 3.5M
- Output
- 7.6K
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT + standard tools
Answer20
WorkflowUpload1→Unzip→Nl→Grep→GSE242423 D2 matrix diagnostic→1 more tools
- Total tokens
- 5.5M
- Output
- 12.5K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionStandard tools only
Answer20
- Total tokens
- 1.3M
- Output
- 4.1K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
Answer20
WorkflowFilter Tabular→Nl→Tp Grep Tool
- Total tokens
- 2.2M
- Output
- 16.5K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
Answer20
- Total tokens
- 4.1M
- Output
- 19.8K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
Answer20
- Total tokens
- 2.7M
- Output
- 17.7K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionStandard tools only
Answer20
WorkflowData Fetch→Upload1→Nl→Filter Tabular→Tp Grep Tool
- Total tokens
- 6.0M
- Output
- 19.4K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionStandard tools only
Answer20
- Total tokens
- 2.4M
- Output
- 15.7K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionStandard tools only
Answer20
- Total tokens
- 792.8K
- Output
- 6.4K