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CompBioBench item

genome-assembly-contiguity-q1

Question

In the genome reference file GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna provided, report the N50 (integer, no commas).

Predicted answer
25286925Most likely answer for this question; not uniquely determined from submitted scores.
Domain
Genomics
Question style
Routine Analysis

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.

Galaxy

12/12 terminal item results

UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.

Codex GPT-5.5

3 replicates
Codex GPT-5.5

Replicate 1

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta StatsGfastats
Codex GPT-5.5

Replicate 2

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
108.6K
Output
1.4K
Codex GPT-5.5

Replicate 3

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
74.9K
Output
1.2K

Codex GPT-5.6 Sol

3 replicates
Codex GPT-5.6 Sol

Replicate 1

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
1.3M
Output
3.1K
Codex GPT-5.6 Sol

Replicate 2

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
228.5K
Output
1.3K
Codex GPT-5.6 Sol

Replicate 3

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
203.0K
Output
1.8K

Codex + DeepSeek-v4-pro-0813

3 replicates
Codex + DeepSeek-v4-pro-0813

Replicate 1

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
113.4K
Output
1.8K
Codex + DeepSeek-v4-pro-0813

Replicate 2

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta StatsQuastGfastats
Total tokens
483.5K
Output
7.2K
Codex + DeepSeek-v4-pro-0813

Replicate 3

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
89.5K
Output
1.6K

Codex GPT-5.6 Luna

3 replicates
Codex GPT-5.6 Luna

Replicate 1

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta StatsGfastats
Total tokens
529.2K
Output
4.4K
Codex GPT-5.6 Luna

Replicate 2

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
171.1K
Output
3.9K
Codex GPT-5.6 Luna

Replicate 3

Matches predictionStandard tools only
Answer25286925
Workflow
Fasta Stats
Total tokens
178.7K
Output
2.6K

Anycode

13/13 terminal item results

Codex GPT-5.5

3 replicates
Codex GPT-5.5

Replicate 1

Matches prediction
Answer25286925
Workflow
Local codePython
Codex GPT-5.5

Replicate 2

Matches prediction
Answer25286925
Workflow
Local codePython
Codex GPT-5.5

Replicate 3

Matches prediction
Answer25286925
Workflow
Local code

Codex GPT-5.6 Sol

3 replicates
Codex GPT-5.6 Sol

Replicate 1

Matches prediction
Answer25286925
Workflow
Local code
Codex GPT-5.6 Sol

Replicate 2

Matches prediction
Answer25286925
Workflow
Local code
Codex GPT-5.6 Sol

Replicate 3

Matches prediction
Answer25286925
Workflow
Local code

Codex + DeepSeek-v4-pro-0813

3 replicates
Codex + DeepSeek-v4-pro-0813

Replicate 1

Matches prediction
Answer25286925
Workflow
Local codePython
Total tokens
33.7K
Output
1.2K
Codex + DeepSeek-v4-pro-0813

Replicate 2

Matches prediction
Answer25286925
Workflow
Local code
Total tokens
60.8K
Output
1.7K
Codex + DeepSeek-v4-pro-0813

Replicate 3

Matches prediction
Answer25286925
Workflow
Local codePython
Total tokens
32.9K
Output
751

Codex GPT-5.6 Luna

3 replicates
Codex GPT-5.6 Luna

Replicate 1

Matches prediction
Answer25286925
Workflow
Local code
Codex GPT-5.6 Luna

Replicate 2

Matches prediction
Answer25286925
Workflow
Local code
Codex GPT-5.6 Luna

Replicate 3

Matches prediction
Answer25286925
Workflow
Local code

Codex GPT-6 Astra

1 replicate
Codex GPT-6 Astra

Replicate 1

Matches prediction
Answer25286925
Workflow
Local codePython
Total tokens
33.4K
Output
296