Question
You are given a bulk RNA sequencing FASTQ file (gene.fusion.q2.fq.gz) from human. The data contains a synthetic gene that is a fusion of multiple genes. Your task is to identify the genes whose exons make up the fusion gene. Report the answer as the names of the genes joined by a hyphen, in 5' to 3' order, for each exon, written in all uppercase letters, HGNC symbols. For example: TCF21-COL1A1-FN1
- Inferred answer
MYC-SP1-ZIC2-SP1-CATSPER4Uniquely inferred from submitted scores.
- Domain
- Transcriptomics
- Question style
- Synthetic/Augmented Data
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
CorrectUDT-only
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFusion diagnostic kmer scan→Fusion ordered split read scan→Fusion split component assembly
- Total tokens
- 882.1K
- Output
- 16.0K
Codex GPT-5.5
Replicate 2
CorrectUDT + standard tools
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFusion junction kmer diagnostic→Fusion junction kmer diagnostic v2→Fusion junction render probe v3→UDT render probe→Ncbi Blastn Wrapper
- Total tokens
- 2.5M
- Output
- 19.3K
Codex GPT-5.5
Replicate 3
CorrectUDT + standard tools
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastq Stats→Trinity→Summarize Trinity Fusion Assembly→Summarize Trinity Fusion Assembly v2→Fasta Compute Length→6 more tools
- Total tokens
- 3.9M
- Output
- 18.3K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectUDT + standard tools
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastqc→Rnaspades→Fasta Compute Length→Tp Sort Header Tool→Minimap2→5 more tools
- Total tokens
- 8.9M
- Output
- 19.2K
Codex GPT-5.6 Sol
Replicate 2
CorrectUDT + standard tools
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastqc→Rnaspades→Fasta Stats→Ncbi Makeblastdb→Fusion candidate scan against GENCODE v49→5 more tools
- Total tokens
- 11.6M
- Output
- 25.9K
Codex GPT-5.6 Sol
Replicate 3
CorrectUDT + standard tools
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastqc→Trinity→Salmon→Sort rows→Ncbi Blastn Wrapper→11 more tools
- Total tokens
- 54.4M
- Output
- 58.3K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
CorrectStandard tools only
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowNo Galaxy tool job recorded
- Total tokens
- 36.2M
- Output
- 79.5K
Codex + DeepSeek-v4-pro-0813
Replicate 2
CorrectStandard tools only
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowRnaspades→Fasta Compute Length→Fasta Filter By Length→Ncbi Blastn Wrapper→Ncbi Makeblastdb→2 more tools
- Total tokens
- 13.8M
- Output
- 55.2K
Codex + DeepSeek-v4-pro-0813
Replicate 3
CorrectStandard tools only
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastq Stats→Rnaspades→Fasta Stats→Trinity→Fasta Filter By Length→6 more tools
- Total tokens
- 8.5M
- Output
- 42.8K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
CorrectStandard tools only
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastqc→Trinity→Fasta Compute Length→Fasta Filter By Length→Ncbi Blastn Wrapper→3 more tools
- Total tokens
- 21.4M
- Output
- 44.5K
Codex GPT-5.6 Luna
Replicate 2
CorrectStandard tools only
AnswerMYC-SP1-ZIC2-SP1-CATSPER4
WorkflowFastq Stats→Trinity→Fasta Filter By Length→Ncbi Blastn Wrapper
- Total tokens
- 44.7M
- Output
- 79.4K
Codex GPT-5.6 Luna
Replicate 3
IncorrectStandard tools only
AnswerTPM3-MT-ATP6-MT-CO3
WorkflowFastq Stats→Fastqc→Trinity→Fasta Filter By Length→Ncbi Blastn Wrapper
- Total tokens
- 33.1M
- Output
- 86.7K