Question
You are given paired-end RNA sequencing FASTQ files (gene.fusion.q1.R1.fq.gz, gene.fusion.q1.R2.fq.gz) from human. The data contains a synthetic gene fusion event. Your task is to identify the fusion genes. Report the answer as the names of the two genes joined by a hyphen, with the 5′ partner first and the 3′ partner second, written in all uppercase letters, HGNC symbols. For example: TCF21-COL1A1
- Predicted answer
GAPDH-SOX2Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Transcriptomics
- Question style
- Synthetic/Augmented Data
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionStandard tools only
AnswerGAPDH-SOX2
Codex GPT-5.5
Replicate 2
Matches predictionUDT + standard tools
AnswerGAPDH-SOX2
WorkflowFASTQ Diagnostic Gene Fusion Q1→UDT Path Probe Gene Fusion Q1→UDT Path Probe Gene Fusion Q1 v2→Kallisto Quant→Pizzly
- Total tokens
- 2.0M
- Output
- 14.7K
Codex GPT-5.5
Replicate 3
Matches predictionStandard tools only
AnswerGAPDH-SOX2
WorkflowRna Star→Arriba→Arriba Get Filters
- Total tokens
- 988.0K
- Output
- 9.5K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionStandard tools only
AnswerGAPDH-SOX2
WorkflowRna Star→Arriba→Tp Grep Tool
- Total tokens
- 7.7M
- Output
- 10.9K
Codex GPT-5.6 Sol
Replicate 2
Matches predictionStandard tools only
AnswerGAPDH-SOX2
- Total tokens
- 14.8M
- Output
- 12.1K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionStandard tools only
AnswerGAPDH-SOX2
WorkflowFastqc→Rna Star→Arriba→Filter rows
- Total tokens
- 17.9M
- Output
- 17.6K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
AnswerGAPDH-SOX2
- Total tokens
- 4.3M
- Output
- 27.6K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
AnswerGAPDH-SOX2
WorkflowConverter Gz To Uncompressed→Rna Star
- Total tokens
- 7.8M
- Output
- 34.8K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
AnswerGAPDH-SOX2
- Total tokens
- 3.6M
- Output
- 18.3K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionStandard tools only
AnswerGAPDH-SOX2
- Total tokens
- 19.1M
- Output
- 40.4K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionStandard tools only
AnswerGAPDH-SOX2
- Total tokens
- 6.8M
- Output
- 25.0K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionStandard tools only
AnswerGAPDH-SOX2
WorkflowUpload1→Fastq Stats→Rna Star→Arriba
- Total tokens
- 5.1M
- Output
- 22.5K