Question
Retrieve the median expression level for APOE from the 'Brain_Cortex' samples in the GTEx v8 reference dataset. The value should be in Transcripts Per Million as an integer.
- Predicted answer
604Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Transcriptomics
- Question style
- Retrieval
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
Answer604
WorkflowGTEx APOE Brain Cortex median TPM→GTEx v8 median TPM header probe→GTEx APOE Brain Cortex median TPM exact column
- Total tokens
- 635.8K
- Output
- 5.6K
Codex GPT-5.5
Replicate 2
Matches predictionStandard tools only
Answer604
WorkflowTp Head Tool→Tp Grep Tool→Select columns
- Total tokens
- 675.0K
- Output
- 4.9K
Codex GPT-5.5
Replicate 3
Matches predictionStandard tools only
Answer604
WorkflowGalaxy dataset inspection
- Total tokens
- 744.2K
- Output
- 6.6K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionStandard tools only
Answer604
WorkflowUpload1→Tp Grep Tool→Select columns
- Total tokens
- 6.3M
- Output
- 10.9K
Codex GPT-5.6 Sol
Replicate 2
Matches predictionStandard tools only
Answer604
WorkflowConverter Gz To Uncompressed→Grep→Select columns
- Total tokens
- 1.3M
- Output
- 6.9K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionStandard tools only
Answer604
WorkflowUpload1→Converter Gz To Uncompressed→Show Beginning1→Filter Tabular→Filter rows→3 more tools
- Total tokens
- 2.6M
- Output
- 9.5K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
Answer604
WorkflowGrep→Select columns→Table Compute→Add A Column1
- Total tokens
- 2.0M
- Output
- 20.4K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
Answer604
- Total tokens
- 748.6K
- Output
- 7.8K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
Answer604
WorkflowFilter Tabular→Datamash Ops
- Total tokens
- 3.5M
- Output
- 19.8K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionStandard tools only
Answer604
WorkflowFilter Tabular→Tp Grep Tool→Select columns→Datamash Transpose→Datamash Ops→1 more tools
- Total tokens
- 7.6M
- Output
- 22.7K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionUDT-only
Answer604
WorkflowGTEx APOE Brain Cortex Median Validation
- Total tokens
- 2.3M
- Output
- 14.6K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionStandard tools only
Answer604
WorkflowFilter Tabular→Datamash Transpose
- Total tokens
- 9.9M
- Output
- 31.4K