Question
finding.geo.q1.h5ad contains a scRNA-seq dataset that is derived from a Supplementary file on GEO, and processed to filter out barcodes with low counts. Find the GSE ID of the corresponding record. Return the GSE ID at the SuperSeries level, e.g. GSE242424.
- Inferred answer
GSE114176Uniquely inferred from submitted scores.- Domain
- Single-cell
- Question style
- Metadata Recovery
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
IncorrectUDT-only
AnswerGSE117542
WorkflowH5AD accession diagnostic→H5AD index signature→H5AD GEO supplement comparison→H5AD GEO supplement comparison grep→H5AD expression signature→15 more tools
- Total tokens
- 11.3M
- Output
- 62.0K
Codex GPT-5.5
Replicate 2
RerunIncorrectUDT-only
AnswerGSE132730
WorkflowInspect H5AD GEO metadata q1→Inspect H5AD GEO metadata q1 v2→Fingerprint H5AD GEO q1→Marker H5AD GEO q1→Compare GSE118614 barcodes q1→5 more tools
- Total tokens
- 12.7M
- Output
- 46.7K
Codex GPT-5.5
Replicate 3
RerunIncorrectUDT-only
AnswerGSE153164
WorkflowH5AD metadata h5dump→H5AD index samples→H5AD count fingerprint→H5AD marker panel→Compare GSE112846 supplement→16 more tools
- Total tokens
- 30.3M
- Output
- 99.4K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectUDT + standard tools
AnswerGSE114176
WorkflowAnndata Inspect→Inspect H5AD fingerprint→Inspect H5AD fingerprint extended→Compare H5AD to GEO inventory→Neural marker fingerprint→5 more tools
- Total tokens
- 9.2M
- Output
- 25.5K
Codex GPT-5.6 Sol
Replicate 2
CorrectUDT-only
AnswerGSE114176
WorkflowInspect H5AD identity metadata→Fingerprint H5AD counts→Profile H5AD tissue markers→Verify exact GEO H5 derivation→Verify GEO H5 by Ensembl IDs
- Total tokens
- 3.1M
- Output
- 14.7K
Codex GPT-5.6 Sol
Replicate 3
CorrectUDT + standard tools
AnswerGSE114176
WorkflowAnndata Inspect→SciPy→H5AD source fingerprint q1→H5AD tissue marker fingerprint q1→Stage GSE130803 RAW archive→17 more tools
- Total tokens
- 38.6M
- Output
- 73.6K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
RerunCorrectUDT-only
AnswerGSE114176
WorkflowGEO h5ad raw H5 match
- Total tokens
- 4.5M
- Output
- 43.5K
Codex + DeepSeek-v4-pro-0813
Replicate 2
IncorrectStandard tools only
AnswerGSE148115
WorkflowAnndata Inspect→Scanpy Inspect→Anndata Export→Tp Sort Header Tool→Comp1
- Total tokens
- 76.4M
- Output
- 189.5K
Codex + DeepSeek-v4-pro-0813
Replicate 3
IncorrectUDT + standard tools
Answerna
WorkflowAnndata Inspect→Anndata Export→Galaxy UDT→H5AD metadata dump→x→10 more tools
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
CorrectUDT + standard tools
AnswerGSE114176
WorkflowAnndata Inspect→Scanpy Inspect→H5AD Matrix Signature→H5AD Layout Diagnostic→H5AD Layout Diagnostic Binary→62 more tools
- Total tokens
- 67.1M
- Output
- 152.7K
Codex GPT-5.6 Luna
Replicate 2
CorrectUDT + standard tools
AnswerGSE114176
WorkflowAnndata Inspect→Anndata Export→Galaxy Matrix Fingerprint→Galaxy Matrix Fingerprint HDF5→Upload1→34 more tools
- Total tokens
- 121.8M
- Output
- 369.9K
Codex GPT-5.6 Luna
Replicate 3
CorrectUDT + standard tools
AnswerGSE114176
WorkflowAnndata Inspect→Anndata Export→H5AD Runtime Probe→Profile H5AD Matrix→Compare H5AD to Cell Ranger H5→28 more tools
- Total tokens
- 101.2M
- Output
- 290.1K