exogenous-mix-reads-q2

Question

I have FASTQ data from a perturbation experiment involving KLF4 exogenous overexpression using a Sendai virus. I want to estimate the fraction of exogenous-origin reads in exogenous.mix.reads.q2.mix.fq, given exogenous.mix.reads.q2.exo.fq (early timepoint, assumed purely exogenous) and exogenous.mix.reads.q2.endo.fq (later timepoint, predominantly endogenous). All files contain reads mapping to KLF4. I don't have details on the Sendai construct. If possible, estimate the percent of exogenous reads in exogenous.mix.reads.q2.mix.fq (by read count) to the nearest 10 and return only the integer (e.g. 50); if not possible, return NA.

Inferred answer

NAUniquely inferred from submitted scores.

Domain

Transcriptomics

Question style

Synthetic/Augmented Data

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.