Question
Consider the DNA sequence provided as dna_with_secret_motif.fasta. Of these motifs, which is the most prevalent? FOXA1, GATA3, MAX, STAT1, OCT4, P53, NANOG, HNF4A, TBP, FOS, MYC, JUN, FOXO1, CTCF, TCF7, SOX2, E2F1, CREB1, GATA1, KLF3.
- Predicted answer
CTCFMost likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Epigenomics
- Question style
- Synthetic/Augmented Data
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
AnswerCTCF
WorkflowMotif prevalence JASPAR 2026→Motif prevalence JASPAR 2026 pvalue
Codex GPT-5.5
Replicate 2
Matches predictionUDT + standard tools
AnswerCTCF
WorkflowScan candidate motifs with JASPAR 2026→Scan candidate motifs with JASPAR 2026 v2→Meme Fimo→Datamash Ops→Grep
- Total tokens
- 1.9M
- Output
- 14.9K
Codex GPT-5.5
Replicate 3
Matches predictionUDT + standard tools
AnswerCTCF
WorkflowMotif prevalence with FIMO→Motif prevalence with FIMO v2→UDT render probe→UDT render probe 2→Meme Meme→2 more tools
- Total tokens
- 2.4M
- Output
- 17.3K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionUDT-only
AnswerCTCF
WorkflowJASPAR FIMO candidate motif prevalence
- Total tokens
- 813.5K
- Output
- 7.3K
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT + standard tools
AnswerCTCF
WorkflowMeme Meme→JASPAR Candidate Motif Inventory→Scan Listed JASPAR Motifs and Rank Prevalence
- Total tokens
- 1.7M
- Output
- 10.2K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionUDT + standard tools
AnswerCTCF
WorkflowMeme Meme→JASPAR Candidate Motif Inventory→Extract JASPAR Candidate Motifs→Meme Fimo→TF Motif Prevalence Summary JASPAR2026
- Total tokens
- 3.6M
- Output
- 11.7K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
AnswerCTCF
- Total tokens
- 2.5M
- Output
- 23.7K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
AnswerCTCF
WorkflowMeryl Count Kmers→Meryl Print→Meme Fimo→Select columns→Count1
- Total tokens
- 5.4M
- Output
- 26.1K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
AnswerCTCF
WorkflowMeme Fimo→Count1→Select columns
- Total tokens
- 2.8M
- Output
- 18.5K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionStandard tools only
AnswerCTCF
WorkflowMeme Meme→Meme Fimo
- Total tokens
- 9.8M
- Output
- 29.2K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionStandard tools only
AnswerCTCF
WorkflowMeme Meme→Emboss: Fuzznuc37
- Total tokens
- 3.8M
- Output
- 16.8K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionStandard tools only
AnswerCTCF
WorkflowMeme Meme→Fasta Regex Finder→Count1
- Total tokens
- 5.0M
- Output
- 21.2K