encode-atac-pipeline-q1

Question

encode.atac.pipeline.q1.R1.fq.gz and encode.atac.pipeline.q1.R2.fq.gz are paired-end ATAC-seq reads from a human sample. Process them through the ENCODE ATAC-seq pipeline v2.2.3 (https://github.com/ENCODE-DCC/atac-seq-pipeline/tree/v2.2.3). Keep the input json similar to https://github.com/ENCODE-DCC/atac-seq-pipeline/blob/v2.2.3/example_input_json/ENCSR356KRQ_subsampled.json, but remove the atac.enable_xcor line. After the pipeline completes, report the reproducibility IDR N_opt number from the qc.json file.

Inferred answer

29556Uniquely inferred from submitted scores.

Domain

Epigenomics

Question style

Tooling

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.