Question
You are given a single-end RNA-seq FASTQ file (contaminated.rna.q3.fq.gz). The sample is expected to be human, but it may contain reads from another organism. Determine the genus of the most likely non-human organism present, if any. Report your answer as the exact scientific genus name in all lowercase letters (for example, mus), else respond with "none".
- Inferred answer
panUniquely inferred from submitted scores.
- Domain
- Transcriptomics
- Question style
- Synthetic/Augmented Data
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
CorrectUDT + standard tools
Answerpan
WorkflowSeqtk Sample→Seqtk Seq→Ncbi Blastn Wrapper→Summarize BLAST Genera→Kraken2→5 more tools
Codex GPT-5.5
Replicate 2
CorrectUDT + standard tools
Answerpan
WorkflowExtract Kraken Pan validation reads→Extract Kraken Pan validation reads v2
- Total tokens
- 2.1M
- Output
- 14.6K
Codex GPT-5.5
Replicate 3
RerunCorrectStandard tools only
Answerpan
WorkflowKraken2→Krakentools: Extract Kraken Reads By ID→FASTQ Summary Statistics→NCBI BLAST+ blastn
- Total tokens
- 1.4M
- Output
- 9.5K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectStandard tools only
Answerpan
WorkflowFastqc→Kraken2→Grep→Tp Sort Header Tool→Hisat2
- Total tokens
- 10.0M
- Output
- 11.1K
Codex GPT-5.6 Sol
Replicate 2
IncorrectUDT + standard tools
Answerrattus
WorkflowKraken2→Bowtie2→Fastq To Fasta Python→Subset FASTA q3→Hisat2→2 more tools
- Total tokens
- 99.5M
- Output
- 67.6K
Codex GPT-5.6 Sol
Replicate 3
RerunCorrectStandard tools only
Answerpan
WorkflowKraken2→Select→Sort
- Total tokens
- 26.2M
- Output
- 34.7K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
CorrectStandard tools only
Answerpan
- Total tokens
- 644.0K
- Output
- 9.8K
Codex + DeepSeek-v4-pro-0813
Replicate 2
IncorrectStandard tools only
Answermycoplasma
WorkflowNo Galaxy tool job recorded
- Total tokens
- 28.7M
- Output
- 71.4K
Codex + DeepSeek-v4-pro-0813
Replicate 3
CorrectStandard tools only
Answerpan
WorkflowKraken2→Krakentools Extract Kraken Reads→Fastq To Fasta Python→Cshl Fastq To Fasta→Seqtk Seq→1 more tools
- Total tokens
- 2.0M
- Output
- 14.7K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
CorrectStandard tools only
Answerpan
WorkflowKraken2→Kraken2Tax→Datamash Ops→Filter Tabular→Tp Grep Tool
- Total tokens
- 3.4M
- Output
- 13.3K
Codex GPT-5.6 Luna
Replicate 2
CorrectStandard tools only
Answerpan
WorkflowFastq Stats→Kraken2→Sylph Profile→Kraken2Tax→Filter Tabular→1 more tools
- Total tokens
- 5.7M
- Output
- 24.7K
Codex GPT-5.6 Luna
Replicate 3
CorrectStandard tools only
Answerpan
WorkflowKraken2→Group and aggregate→Count1→Kraken2Tax→Filter rows
- Total tokens
- 3.3M
- Output
- 10.1K