Back to results

CompBioBench item

compute-gc-content-interval-q1

Question

Using the GRCh38.p13 human reference genome, retrieve the reference DNA sequence for chromosome 1 from positions 1,000,000 to 1,000,100 (1-based, inclusive) on the '+' strand, and calculate: (1) gc_percent (rounded to 2 decimals), (2) length, (3) n_count (the number of Ns in the sequence), and (4) sequence_md5 (MD5 of the uppercase interval sequence). Return the results as a comma-separated string in the format: gc_percent,length,n_count,sequence_md5. For example: "31.86,10,50,v24a827t740a77764d0d8e35ba56f612"

Predicted answer
83.17,101,0,c94c827d740a77064d0d8e35bb54f686Most likely answer for this question; not uniquely determined from submitted scores.
Domain
Genomics
Question style
Routine Analysis

An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.

Galaxy

12/12 terminal item results

UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.

Codex GPT-5.5

3 replicates
Codex GPT-5.5

Replicate 1

Matches predictionUDT-only
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
GRCh38.p13 interval metricsGRCh38.p13 interval metrics check
Codex GPT-5.5

Replicate 2

Matches predictionUDT-only
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
GRCh38.p13 chr1 interval statistics
Total tokens
395.8K
Output
4.6K
Codex GPT-5.5

Replicate 3

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
GRCh38.p13 chr1 interval statsGRCh38p13 chr1 interval stats v2Data FetchBedtools GetfastabedConverter Gz To Uncompressed5 more tools
Total tokens
1.8M
Output
15.2K

Codex GPT-5.6 Sol

3 replicates
Codex GPT-5.6 Sol

Replicate 1

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Extract Genomic Dna 1Uppercase interval sequence metricsSeq CompositionIndependent uppercase interval MD5 check
Codex GPT-5.6 Sol

Replicate 2

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Extract Genomic Dna 1GRCh38.p13 interval metrics
Total tokens
1.1M
Output
6.6K
Codex GPT-5.6 Sol

Replicate 3

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Extract Genomic Dna 1Compare GRCh38 coordinate candidatesCalculate GRCh38 interval metrics
Total tokens
3.1M
Output
9.9K

Codex + DeepSeek-v4-pro-0813

3 replicates
Codex + DeepSeek-v4-pro-0813

Replicate 1

Matches predictionStandard tools only
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
No Galaxy tool job recorded
Total tokens
8.3M
Output
28.7K
Codex + DeepSeek-v4-pro-0813

Replicate 2

Matches predictionStandard tools only
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
No Galaxy tool job recorded
Total tokens
5.5M
Output
36.1K
Codex + DeepSeek-v4-pro-0813

Replicate 3

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Converter Gz To UncompressedBedtools GetfastabedFasta Compute LengthFasta StatsSeq Composition1 more tools
Total tokens
1.7M
Output
13.5K

Codex GPT-5.6 Luna

3 replicates
Codex GPT-5.6 Luna

Replicate 1

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Fasta StatsSeq CompositionGRCh38 interval metricsUDT render probeSecure Hash Message Digest
Total tokens
8.5M
Output
27.4K
Codex GPT-5.6 Luna

Replicate 2

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Extract Genomic Dna 1Bedtools GetfastabedFasta StatsSeq CompositionGRCh38.p13 interval metrics1 more tools
Total tokens
6.8M
Output
21.7K
Codex GPT-5.6 Luna

Replicate 3

Matches predictionUDT + standard tools
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Datasets Download GenomeExtract Genomic Dna 1Bedtools GetfastabedFasta StatsReference sequence interval metrics12 more tools
Total tokens
17.9M
Output
52.3K

Anycode

13/13 terminal item results

Codex GPT-5.5

3 replicates
Codex GPT-5.5

Replicate 1

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code
Codex GPT-5.5

Replicate 2

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code
Codex GPT-5.5

Replicate 3

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local codePython

Codex GPT-5.6 Sol

3 replicates
Codex GPT-5.6 Sol

Replicate 1

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code
Codex GPT-5.6 Sol

Replicate 2

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code
Codex GPT-5.6 Sol

Replicate 3

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code

Codex + DeepSeek-v4-pro-0813

3 replicates
Codex + DeepSeek-v4-pro-0813

Replicate 1

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local codePython
Total tokens
48.5K
Output
2.2K
Codex + DeepSeek-v4-pro-0813

Replicate 2

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local codePython
Total tokens
266.1K
Output
4.7K
Codex + DeepSeek-v4-pro-0813

Replicate 3

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local codePython
Total tokens
141.1K
Output
5.7K

Codex GPT-5.6 Luna

3 replicates
Codex GPT-5.6 Luna

Replicate 1

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local codePython
Codex GPT-5.6 Luna

Replicate 2

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code
Codex GPT-5.6 Luna

Replicate 3

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local code

Codex GPT-6 Astra

1 replicate
Codex GPT-6 Astra

Replicate 1

Matches prediction
Answer83.17,101,0,c94c827d740a77064d0d8e35bb54f686
Workflow
Local codePython
Total tokens
46.1K
Output
611