Question
Using the single-cell dataset in AnnData format located at pbmc3k.h5ad, determine the average log-normalized expression for the gene S100B in all cells belonging to the group labeled 'B cells' in the 'louvain' metadata column. Use adata.X for already log-normalized expression. Use two decimal places in the answer.
- Predicted answer
-0.14Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Single-cell
- Question style
- Routine Analysis
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT + standard tools
Answer-0.14
WorkflowAverage S100B in B cells→H5AD path render probe→TXT path render probe
Codex GPT-5.5
Replicate 2
Matches predictionUDT + standard tools
Answer-0.14
WorkflowAnndata Export→S100B B cells mean
- Total tokens
- 852.7K
- Output
- 6.1K
Codex GPT-5.5
Replicate 3
Matches predictionUDT + standard tools
Answer-0.14
WorkflowAnnData→S100B UDT render probe→Anndata Export→Filter Tabular→Paste1→2 more tools
- Total tokens
- 4.1M
- Output
- 16.5K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionStandard tools only
Answer-0.14
WorkflowScanpy Filter→Anndata Inspect→Datamash Ops
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT-only
Answer-0.14
WorkflowPBMC3K S100B input diagnostic→PBMC3K mean S100B expression in B cells
- Total tokens
- 978.4K
- Output
- 5.1K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionUDT-only
Answer-0.14
WorkflowPBMC3K S100B input diagnostic→PBMC3K S100B mean in B cells
- Total tokens
- 1.2M
- Output
- 5.7K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
Answer-0.14
WorkflowNo Galaxy tool job recorded
- Total tokens
- 3.5M
- Output
- 24.7K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
Answer-0.14
WorkflowNo Galaxy tool job recorded
- Total tokens
- 4.5M
- Output
- 32.0K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
Answer-0.14
WorkflowAnndata Inspect→Scanpy Filter Cells→Scanpy Filter→Anndata Export→Datamash Ops
- Total tokens
- 3.8M
- Output
- 15.2K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionUDT + standard tools
Answer-0.14
WorkflowPBMC3K S100B diagnostic→PBMC3K UDT render probe→Anndata Export→Scanpy Filter→Datamash Ops
- Total tokens
- 11.6M
- Output
- 35.0K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionStandard tools only
Answer-0.14
WorkflowAnndata Export→Filter Tabular→Nl→Select columns→Grep→3 more tools
- Total tokens
- 7.3M
- Output
- 22.0K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionUDT + standard tools
Answer-0.14
WorkflowAnndata Inspect→S100B mean in B cells→UDT input path probe→UDT AnnData path probe→UDT command probe→6 more tools
- Total tokens
- 8.4M
- Output
- 33.9K