Question
Use the Borzoi model (replicate 0) to predict the total RNA-seq coverage on the forward strand for the experiment ENCFF281BWX, over the genomic interval chr1:70157360-70353968 in the hg38 genome. Return the total predicted RNA-seq coverage over the specified interval, which means reversing any transformations that were applied to RNA-seq coverage before training the Borzoi model. The Borzoi paper is saved as borzoi.rnaseq.q1.pdf. Round the answer to the nearest 10.
- Inferred answer
9380Uniquely inferred from submitted scores.
- Domain
- Machine Learning
- Question style
- Tooling
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
CorrectUDT-only
Answer9380
WorkflowBorzoi container probe→Borzoi PyTorch probe→Borzoi RNA-seq interval prediction→Borzoi RNA-seq interval prediction corrected→Galaxy disk probe→2 more tools
Codex GPT-5.5
Replicate 2
CorrectUDT-only
Answer9380
WorkflowBorzoi runtime probe→Borzoi RNA-seq Q1 prediction
- Total tokens
- 1.4M
- Output
- 10.2K
Codex GPT-5.5
Replicate 3
RerunCorrectUDT-only
Answer9380
WorkflowBorzoi RNA-seq Q1 diagnostic→Borzoi RNA-seq Q1 replicate 0 prediction→Borzoi RNA-seq Q1 replicate 0 TensorFlow prediction→UDT resource probe→Borzoi RNA-seq Q1 replicate 0 TensorFlow prediction highmem→13 more tools
- Total tokens
- 9.2M
- Output
- 26.0K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectUDT + standard tools
Answer9380
WorkflowGalaxy UDT→borzoi_predict→Borzoi prediction→UDT schema probe→TensorFlow container probe→5 more tools
Codex GPT-5.6 Sol
Replicate 2
CorrectUDT + standard tools
Answer9380
WorkflowExtract Genomic Dna 1→Borzoi replicate 0 RNA-seq count-space coverage
- Total tokens
- 1.8M
- Output
- 9.6K
Codex GPT-5.6 Sol
Replicate 3
CorrectUDT-only
Answer9380
WorkflowBorzoi hg38 input and target diagnostic→Borzoi replicate 0 untransformed RNA-seq total→Borzoi replicate 0 untransformed RNA-seq total direct checkpoint→Borzoi replicate 0 untransformed RNA-seq total direct checkpoint py310
- Total tokens
- 14.2M
- Output
- 16.5K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
RerunCorrectUDT + standard tools
Answer9380
WorkflowProbe Borzoi Image→Probe Borzoi Image V2→Probe Borzoi Image V3→Extract Genomic DNA→bedtools getfasta→6 more tools
- Total tokens
- 6.4M
- Output
- 27.1K
Codex + DeepSeek-v4-pro-0813
Replicate 2
CorrectUDT + standard tools
Answer9380
Workflowpysam→Extract Genomic Dna 1→Borzoi RNA forward coverage→SciPy→Borzoi RNA forward coverage v2→1 more tools
- Total tokens
- 10.4M
- Output
- 39.2K
Codex + DeepSeek-v4-pro-0813
Replicate 3
CorrectUDT + standard tools
Answer9380
Workflowpysam→Borzoi Runtime Probe v2→Borzoi Runtime Probe v3→Cat Probe→Echo Probe→16 more tools
- Total tokens
- 20.2M
- Output
- 59.0K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
RerunCorrectUDT-only
Answer9380
WorkflowUser-defined tool
- Total tokens
- 9.1M
- Output
- 31.6K
Codex GPT-5.6 Luna
Replicate 2
CorrectUDT-only
Answer9380
WorkflowBorzoi runtime probe→Borzoi HF network probe→Borzoi HF file probe→Stage Borzoi replicate 0 checkpoint→Stage hg38 Borzoi input window→2 more tools
- Total tokens
- 6.8M
- Output
- 30.0K
Codex GPT-5.6 Luna
Replicate 3
CorrectUDT-only
Answer9380
WorkflowBorzoi Runtime Probe→Borzoi Replicate 0 Forward Coverage Diagnostic→Borzoi Raw Output Check→Borzoi Replicate 0 Forward Coverage Inverse Sum
- Total tokens
- 4.5M
- Output
- 25.0K