Question
From the given ENCFF822FDB.bigWig file corresponding to an ENCODE DNase-seq experiment in mouse brain (mm10), find the 1Mbp interval with the 3rd highest total signal intensity. Consider only those intervals that start at multiples of 1Mbp, and ignore intervals at chromosome ends that are smaller than 1Mbp. Consider only chromosomes 1-19. Report as 0-based coordinates in chr:start-end format (no commas).
- Predicted answer
chr8:70000000-71000000Most likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Epigenomics
- Question style
- Routine Analysis
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionUDT-only
Answerchr8:70000000-71000000
WorkflowRank bigWig 1Mb bins and report third
Codex GPT-5.5
Replicate 2
Matches predictionUDT-only
Answerchr8:70000000-71000000
WorkflowbigWig diagnostic→bigWig top 1Mb bins
- Total tokens
- 411.5K
- Output
- 3.4K
Codex GPT-5.5
Replicate 3
Matches predictionUDT-only
Answerchr8:70000000-71000000
WorkflowbigWig 1Mb diagnostic→Rank bigWig 1Mb bins→Validate top bigWig bins
- Total tokens
- 424.9K
- Output
- 6.0K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionUDT + standard tools
Answerchr8:70000000-71000000
WorkflowBedtools Makewindowsbed→UDT smoke test→UDT smoke braced→Rank complete 1 Mb BigWig windows→Verify top BigWig windows independently→1 more tools
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT + standard tools
Answerchr8:70000000-71000000
WorkflowInspect BigWig chromosome metadata→Bedtools Makewindowsbed→Filter rows→Filter Tabular→Rank exact BigWig signal in 1 Mb windows
- Total tokens
- 2.1M
- Output
- 9.2K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionUDT-only
Answerchr8:70000000-71000000
WorkflowBigWig 1 Mb window diagnostic→Rank exact BigWig 1 Mb total-signal windows
- Total tokens
- 2.6M
- Output
- 11.6K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionUDT + standard tools
Answerchr8:70000000-71000000
WorkflowNo Galaxy tool job recorded
- Total tokens
- 9.8M
- Output
- 54.8K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
Answerchr8:70000000-71000000
WorkflowNo Galaxy tool job recorded
- Total tokens
- 23.3M
- Output
- 75.8K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
Answerchr8:70000000-71000000
WorkflowBigwigtowig→Filter Tabular→Grep→Bedtools Makewindowsbed→Wiggle2Simple1→3 more tools
- Total tokens
- 10.7M
- Output
- 42.1K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionUDT + standard tools
Answerchr8:70000000-71000000
WorkflowbigWig diagnostic→UDT template probe→UDT render probe→Deeptools Multi Bigwig Summary→Filter Tabular→3 more tools
- Total tokens
- 12.1M
- Output
- 49.3K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionUDT + standard tools
Answerchr8:70000000-71000000
WorkflowDeeptools Multi Bigwig Summary→BigWig window statistics probe→Bedtools Makewindowsbed→Bigwigtowig→Wiggle2Simple1→3 more tools
- Total tokens
- 16.9M
- Output
- 39.8K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionUDT + standard tools
Answerchr8:70000000-71000000
WorkflowDeeptools Multi Bigwig Summary→BigWig Window Diagnostic→Rank BigWig 1Mbp Windows
- Total tokens
- 2.2M
- Output
- 17.7K