Question
In the given ENCODE narrowpeak bed file ENCFF333TAT.bed.gz, convert each interval into a 500bp interval centered at the peak summit. Merge all intervals, and then exclude any that overlaps with the provided blacklist file ENCFF356LFX.bed.gz. Return the total number of bases in the final file, no commas.
- Inferred answer
111423829Uniquely inferred from submitted scores.
- Domain
- Epigenomics
- Question style
- Routine Analysis
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
CorrectUDT-only
Answer111423829
WorkflowSummit 500bp blacklist base count→Summit 500bp diagnostics
Codex GPT-5.5
Replicate 2
CorrectUDT-only
Answer111423829
WorkflowNarrowPeak Summit Diagnostic→NarrowPeak 500bp Blacklist Total→Bedtools
- Total tokens
- 386.5K
- Output
- 6.3K
Codex GPT-5.5
Replicate 3
CorrectUDT + standard tools
Answer111423829
WorkflowSummit centered interval diagnostic→Summit centered interval diagnostic v2→Summit centered interval diagnostic v3→Add A Column1→Select columns→4 more tools
- Total tokens
- 2.0M
- Output
- 12.4K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
CorrectUDT + standard tools
Answer111423829
WorkflowAdd A Column1→Galaxy UDT→center_peaks→Center peaks→Center narrowPeak summits, merge, exclude blacklist, and total bases→1 more tools
Codex GPT-5.6 Sol
Replicate 2
CorrectStandard tools only
Answer111423829
WorkflowAdd A Column1→Select columns→Bedtools Sortbed→Summary Statistics1→Bedtools Mergebed→2 more tools
- Total tokens
- 3.3M
- Output
- 13.7K
Codex GPT-5.6 Sol
Replicate 3
CorrectStandard tools only
Answer111423829
WorkflowSummary Statistics1→Add A Column1→Select columns→Sort rows→Bedtools Mergebed→2 more tools
- Total tokens
- 8.0M
- Output
- 9.8K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
CorrectUDT + standard tools
Answer111423829
WorkflowNarrowPeak center merge blacklist total→Bedtools Mergebed→Bedtools Intersectbed→Sum BED bases
- Total tokens
- 1.5M
- Output
- 19.5K
Codex + DeepSeek-v4-pro-0813
Replicate 2
CorrectUDT + standard tools
Answer111423829
WorkflowNo Galaxy tool job recorded
- Total tokens
- 21.6M
- Output
- 65.8K
Codex + DeepSeek-v4-pro-0813
Replicate 3
CorrectStandard tools only
Answer111423829
WorkflowAdd A Column1→Select columns→Bedtools Sortbed→Bedtools Mergebed→Bedtools Subtractbed→3 more tools
- Total tokens
- 6.1M
- Output
- 29.6K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
CorrectStandard tools only
Answer111423829
WorkflowAdd A Column1→Bedtools Sortbed→Bedtools Mergebed→Select columns→Bedtools Subtractbed
- Total tokens
- 11.0M
- Output
- 31.4K
Codex GPT-5.6 Luna
Replicate 2
CorrectStandard tools only
Answer111423829
WorkflowTp Head Tool→Add A Column1→Bedtools Sortbed→Bedtools Mergebed→Bedtools Subtractbed→1 more tools
- Total tokens
- 2.7M
- Output
- 19.2K
Codex GPT-5.6 Luna
Replicate 3
CorrectStandard tools only
Answer111423829
WorkflowAdd A Column1→Bedtools Sortbed→Bedtools Mergebed→Bedtools Subtractbed→Summary Statistics1→2 more tools
- Total tokens
- 11.7M
- Output
- 33.6K