Question
What is the clinical significance reported in the ClinVar database for the SPI1 variant represented by the HGVS notation NM_003120.3(SPI1):c.143-2A>C? Respond with only the correct cateogry. Answer in all lowercase.
- Predicted answer
pathogenicMost likely answer for this question; not uniquely determined from submitted scores.
- Domain
- Genomics
- Question style
- Retrieval
An answer can be uniquely inferred for 54 of 100 questions from submitted scores. Green: correct · Red: incorrect. For questions without a uniquely determined answer: Blue: matches prediction · Orange: differs from prediction. These are inferred answer checks, not official per-question grades.
Galaxy
12/12 terminal item results
UDT = user-defined tool: custom code executed by Galaxy. Route badges summarize analysis tools, excluding uploads and automatic conversions. How usage is counted.
Codex GPT-5.5
3 replicates
Codex GPT-5.5
Replicate 1
Matches predictionStandard tools only
Answerpathogenic
- Total tokens
- 1.0M
- Output
- 5.9K
Codex GPT-5.5
Replicate 2
Matches predictionUDT-only
Answerpathogenic
WorkflowClinVar HGVS lookup SPI1 c143m2→ClinVar UID diagnostic SPI1 c143m2→ClinVar HGVS lookup SPI1 c143m2 v2
- Total tokens
- 617.6K
- Output
- 5.5K
Codex GPT-5.5
Replicate 3
Matches predictionUDT-only
Answerpathogenic
WorkflowClinVar HGVS lookup for SPI1 variant→ClinVar HGVS lookup for SPI1 variant v2→Upload1
- Total tokens
- 1.3M
- Output
- 11.1K
Codex GPT-5.6 Sol
3 replicates
Codex GPT-5.6 Sol
Replicate 1
Matches predictionStandard tools only
Answerpathogenic
WorkflowTp Replace In Line→Grep→Tp Grep Tool
Codex GPT-5.6 Sol
Replicate 2
Matches predictionUDT-only
Answerpathogenic
WorkflowClinVar exact HGVS lookup→ClinVar exact HGVS lookup with NCBI rate limiting→ClinVar exact HGVS summary
- Total tokens
- 616.6K
- Output
- 5.0K
Codex GPT-5.6 Sol
Replicate 3
Matches predictionUDT-only
Answerpathogenic
WorkflowClinVar exact HGVS lookup for SPI1
- Total tokens
- 3.0M
- Output
- 7.4K
Codex + DeepSeek-v4-pro-0813
3 replicates
Codex + DeepSeek-v4-pro-0813
Replicate 1
Matches predictionStandard tools only
Answerpathogenic
- Total tokens
- 419.5K
- Output
- 4.7K
Codex + DeepSeek-v4-pro-0813
Replicate 2
Matches predictionStandard tools only
Answerpathogenic
- Total tokens
- 337.6K
- Output
- 3.4K
Codex + DeepSeek-v4-pro-0813
Replicate 3
Matches predictionStandard tools only
Answerpathogenic
WorkflowCtb Online Data Fetch→Bcftools Query
- Total tokens
- 1.2M
- Output
- 11.2K
Codex GPT-5.6 Luna
3 replicates
Codex GPT-5.6 Luna
Replicate 1
Matches predictionStandard tools only
Answerpathogenic
WorkflowData Fetch→Tp Find And Replace→Tp Grep Tool→Tp Head Tool
- Total tokens
- 4.5M
- Output
- 22.0K
Codex GPT-5.6 Luna
Replicate 2
Matches predictionStandard tools only
Answerpathogenic
WorkflowData Fetch→Tp Grep Tool
- Total tokens
- 3.8M
- Output
- 11.9K
Codex GPT-5.6 Luna
Replicate 3
Matches predictionUDT + standard tools
Answerpathogenic
WorkflowClinVar HGVS exact lookup→Filter Tabular→Tp Grep Tool
- Total tokens
- 3.3M
- Output
- 19.8K