bix-61-q2

Question

What is the average coverage depth across the entire reference genome for the MDR sample (SRR35233585) rounded to 4 decimal places? Map the trimmed reads with BWA-MEM (read group @RG\tID:SRR35233585\tSM:SRR35233585\tPL:ILLUMINA\tLB:lib1\tPU:unit1) and use samtools for depth calculations.

Ideal answer

12.1283

Category

['Whole Genome Sequencing (WGS)', 'SNP Analysis', 'Genomics', 'Antimicrobial Resistance']