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BixBench item

bix-52-q2

Question

What is the mean of per-chromosome densities (CpGs per base pair) for filtered (>90% or <10% methylation) unique age-related CpGs across all chromosomes (only including those with at least one filtered CpG) in the Jackdaw genome?

Ideal answer
(1.03E-07,1.23E-07)
Category
Epigenomics

Galaxy-API code with skills

3/3 pass

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Answer1.1282568023118e-07
Workflow
csv to tabularRemove beginning1csv to tabularRemove beginning1 plus 6 more

Galaxy-API code without skills

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Answer1.1282568023118e-07
Workflow
Add a column1datamash opsfilter tabularcsv to tabular plus 3 more

Open-ended code with skills

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Answer1.1282568023118119e-07
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 2

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Answer1.1282568023118122e-7
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

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Answer1.12825680231181218085900382079e-7
Workflow
local codeverification note
No Galaxy historyHugging Face trace

Open-ended code without skills

3/3 pass

replicate 1

pass
Answer0.00000011282568023118121808590038207938999097997615882758
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 2

pass
Answer1.1282568023118121808590038207938999097997615882758e-7
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

pass
Answer1.1282568023118122e-07
Workflow
local codeverification note
No Galaxy historyHugging Face trace