bix-38-q1 | BixBench Results

Question

What is the fold-change in median tree length between fungi and animals after calculating tree lengths with PhyKIT?

Ideal answer: 2x larger in fungi
Category: ['Whole Genome Sequencing (WGS)', 'Genomics', 'Phylogenetics and Evolutionary Analysis']

Galaxy-API code with skills

3/3 pass

replicate 1

pass

Answer2.177508966875308

Workflow

phykit metricsdatamash opsFilter1Cut1 plus 2 more

Galaxy history Hugging Face trace

replicate 2

pass

Answer2.177508966875308

Workflow

phykit metricsdatamash opsdatamash transposeAdd a column1

Galaxy history Hugging Face trace

replicate 3

pass

Answer2.1775089668753077

Workflow

phykit metricsdatamash ops

Galaxy history Hugging Face trace

Galaxy-API code without skills

3/3 pass

replicate 1

pass

Answer2.177508966875308

Workflow

phykit metricsdatamash opsdatamash transposeShow tail1 plus 1 more

Galaxy history Hugging Face trace

replicate 2

pass

Answer2.177508966875308

Workflow

phykit metricsdatamash opsdatamash transposeAdd a column1

Galaxy history Hugging Face trace

replicate 3

pass

Answer2.177508966875308

Workflow

phykit metricsdatamash opsfilter tabulardatamash transpose plus 3 more

Galaxy history Hugging Face trace

Open-ended code with skills

3/3 pass

replicate 1

pass

Answer2.177508966875308

Workflow

local codeIQ-TREE

No Galaxy historyHugging Face trace

replicate 2

pass

Answer2.17750896688

Workflow

local codeverification note

No Galaxy historyHugging Face trace

replicate 3

pass

Answer2.177508966875308

Workflow

local codeverification note

No Galaxy historyHugging Face trace

Open-ended code without skills

3/3 pass

replicate 1

pass

Answer2.177508966875308

Workflow

local codeverification note

No Galaxy historyHugging Face trace

replicate 2

pass

Answer2.177508966875308

Workflow

local codeverification note

No Galaxy historyHugging Face trace

replicate 3

pass

Answer2.1775089669

Workflow

local codeverification note

No Galaxy historyHugging Face trace