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BixBench item

bix-35-q2

Question

What is the Mann-Whitney U statistic value for the comparison of evolutionary rates between animals and fungi across all genes? Use PhyKIT's evo_rate function to calculate evolutionary rates.

Ideal answer
3661
Category
['Whole Genome Sequencing (WGS)', 'Genomics', 'Phylogenetics and Evolutionary Analysis']

Galaxy-API code with skills

3/3 pass

Galaxy-API code without skills

3/3 pass

Open-ended code with skills

3/3 pass

replicate 1

pass
Answer3661.0
Workflow
local codeMann-WhitneySciPyIQ-TREE
No Galaxy historyHugging Face trace

replicate 2

pass
Answer3661.0
Workflow
local codeMann-WhitneySciPy
No Galaxy historyHugging Face trace

replicate 3

pass
Answer3661
Workflow
local codeMann-WhitneySciPy
No Galaxy historyHugging Face trace

Open-ended code without skills

3/3 pass

replicate 1

pass
Answer3661
Workflow
local codeSciPy
No Galaxy historyHugging Face trace

replicate 2

pass
Answer3661
Workflow
local codeSciPy
No Galaxy historyHugging Face trace

replicate 3

pass
Answer3661
Workflow
local codeMann-WhitneySciPyMAFFT
No Galaxy historyHugging Face trace