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BixBench item

bix-28-q3

Question

Using PhyKIT to calculate long branch scores, what is the median long branch score for the fungal gene 996662at2759?

Ideal answer
-30.4551
Category
['Whole Genome Sequencing (WGS)', 'Genomics', 'Phylogenetics and Evolutionary Analysis']

Galaxy-API code with skills

3/3 pass

Galaxy-API code without skills

2/3 pass

Open-ended code with skills

3/3 pass

replicate 1

pass
Answer-30.455089045661694
Workflow
local codeMAFFT
No Galaxy historyHugging Face trace

replicate 2

pass
Answer-30.4551
Workflow
local codeMAFFT
No Galaxy historyHugging Face trace

replicate 3

pass
Answer-30.4551
Workflow
local codeMAFFT
No Galaxy historyHugging Face trace

Open-ended code without skills

3/3 pass

replicate 1

pass
Answer-30.4551
Workflow
local codeMAFFTIQ-TREE
No Galaxy historyHugging Face trace

replicate 2

pass
Answer-30.4551
Workflow
local codeMAFFT
No Galaxy historyHugging Face trace

replicate 3

pass
Answer-30.4551
Workflow
local codeMAFFT
No Galaxy historyHugging Face trace