replicate 1
passAnswer
55.6043437095%
Workflow
UDT: codex-rosmap-pca-pc1
Question
After performing principal component analysis (PCA) with 100 components on the log10-transformed gene expression matrix (with pseudocount of 1, samples as rows and genes as columns), what percentage of the total variance in the dataset is explained by the first principal component (reported as a percentage between 0 and 100)?
Galaxy-API code with skills
3/3 passreplicate 2
passAnswer
55.6%
Workflow
upload1datamash transposedatamash opstable compute plus 2 more
replicate 3
passAnswer
55.6043437095388%
Workflow
UDT: codex-rosmap-pca-pc1-variance
Galaxy-API code without skills
0/3 passreplicate 1
failAnswer
56.471730%
Workflow
table computeConvert characters1table computesklearn pca plus 2 more
replicate 2
failAnswer
56.47%
Workflow
csv to tabulartable computedatamash transposetable compute plus 3 more
replicate 3
failAnswer
56.471730%
Workflow
table computedatamash transposesklearn pcaSummary Statistics1 plus 3 more
Open-ended code with skills
3/3 passreplicate 1
passAnswer
55.6043437095388%
Workflow
local codeverification note
replicate 2
passAnswer
55.6043437095%
Workflow
local codeverification note
replicate 3
passAnswer
55.6043437095%
Workflow
local codeverification note
Open-ended code without skills
0/3 passreplicate 1
failAnswer
56.4717047395749%
Workflow
local codeverification note
replicate 2
failAnswer
56.4717047396%
Workflow
local codeverification note
replicate 3
failAnswer
56.4717047395748%
Workflow
local codescikit-learn