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BixBench item

bix-26-q5

Question

In P. aeruginosa KEGG pathway enrichment analysis, how many pathways are significantly enriched under iron-depleted conditions but show no significant enrichment under innate media conditions? Perform KEGG pathway enrichment analysis using genes with |log2FoldChange| > 1.5 and adjusted p-value < 0.05. Consider pathways significantly enriched if their enrichment adjusted p-value < 0.05.

Ideal answer
3
Category
Sequence Analysis,RNA-seq,Transcriptomics,Differential Expression Analysis

Galaxy-API code with skills

0/3 pass

Galaxy-API code without skills

0/3 pass

Open-ended code with skills

0/3 pass

replicate 1

fail
Answer2
Workflow
local codeDESeq2KEGG
No Galaxy historyHugging Face trace

Open-ended code without skills

0/3 pass