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BixBench item

bix-22-q4

Question

What is the Pearson correlation coefficient between gene length and mean expression (across samples) for expressed protein-coding genes (total counts ≥ 10) in CD14 immune cells?

Ideal answer
(0.015,0.025)
Category
Sequence Analysis,RNA-seq,Transcriptomics

Galaxy-API code with skills

3/3 pass

replicate 3

pass
Answer0.015815830205872589
Workflow
Convert characters1csv to tabularCut1Add a column1 plus 10 more

Galaxy-API code without skills

3/3 pass

Open-ended code with skills

3/3 pass

replicate 1

pass
Answer0.0158158302058721
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 2

pass
Answer0.015815830205872593
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

pass
Answer0.015815830205872138
Workflow
local codeverification note
No Galaxy historyHugging Face trace

Open-ended code without skills

3/3 pass

replicate 1

pass
Answer0.015815830205872499
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 2

pass
Answer0.0158158302059
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

pass
Answer0.0158158302059
Workflow
local codeverification note
No Galaxy historyHugging Face trace