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BixBench item

bix-16-q3

Question

How many genes in the provided data show strong positive Spearman correlation between expression and essentiality across cell lines, with a correlation coefficient >= 0.6?

Ideal answer
3
Category
Transcriptomics,Functional Genomics

Galaxy-API code with skills

3/3 pass

Galaxy-API code without skills

2/3 pass

Open-ended code with skills

3/3 pass

replicate 1

pass
Answer3
Workflow
local codeSciPy
No Galaxy historyHugging Face trace

replicate 2

pass
Answer3
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

pass
Answer3
Workflow
local codeverification note
No Galaxy historyHugging Face trace

Open-ended code without skills

2/3 pass

replicate 1

fail
Answer0
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 2

pass
Answer3
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

pass
Answer3
Workflow
local codeverification note
No Galaxy historyHugging Face trace