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BixBench item

bix-16-q1

Question

In the provided data, what gene symbol has the strongest negative Spearman correlation between its expression and essentiality?

Ideal answer
CDKN1A
Category
Transcriptomics,Functional Genomics

Galaxy-API code with skills

3/3 pass

Galaxy-API code without skills

0/3 pass

Open-ended code with skills

3/3 pass

replicate 1

pass
AnswerCDKN1A
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 2

pass
AnswerCDKN1A
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

pass
AnswerCDKN1A
Workflow
local codeverification note
No Galaxy historyHugging Face trace

Open-ended code without skills

0/3 pass

replicate 1

fail
AnswerCCND1
Workflow
local codeSciPy
No Galaxy historyHugging Face trace

replicate 2

fail
AnswerCCND1
Workflow
local codeverification note
No Galaxy historyHugging Face trace

replicate 3

fail
AnswerCCND1
Workflow
local codeverification note
No Galaxy historyHugging Face trace