bix-12-q2 | BixBench Results

Question

What is the median percentage of parsimony informative sites across fungal gene alignments?

Ideal answer: 3.5%
Category: ['Whole Genome Sequencing (WGS)', 'Genomics', 'Phylogenetics and Evolutionary Analysis']

Galaxy-API code with skills

3/3 pass

replicate 1

pass

Answer3.5385%

Workflow

UDT: codex_fungal_pis_archive_20260707datamash opsEMBOSS: noreturn60datamash ops

Galaxy history Hugging Face trace

replicate 2

pass

Answer3.5385%

Workflow

UDT: codex-phykit-pis-archive-20260707datamash opstp replace in linedatamash ops plus 3 more

Galaxy history Hugging Face trace

replicate 3

pass

Answer3.5385%

Workflow

UDT: codex-fungal-pis-median

Galaxy history Hugging Face trace

Galaxy-API code without skills

3/3 pass

replicate 1

pass

Answer3.5385%

Workflow

UDT: codex_fungal_pi_median_20260707_v1

Galaxy history Hugging Face trace

replicate 2

pass

Answer3.5384615385%

Workflow

UDT: codex_amas_pi_percent_fungidatamash ops

Galaxy history Hugging Face trace

replicate 3

pass

Answer3.5385%

Workflow

UDT: codex_fungal_pis_median_20260708

Galaxy history Hugging Face trace

Open-ended code with skills

3/3 pass

replicate 1

pass

Answer3.53846153846154%

Workflow

local codeMAFFT

No Galaxy historyHugging Face trace

replicate 2

pass

Answer3.53846153846%

Workflow

local codeMAFFT

No Galaxy historyHugging Face trace

replicate 3

pass

Answer3.5384615384615383%

Workflow

local codeMAFFT

No Galaxy historyHugging Face trace

Open-ended code without skills

3/3 pass

replicate 1

pass

Answer3.5384615384615383%

Workflow

local codeMAFFT

No Galaxy historyHugging Face trace

replicate 2

pass

Answer3.5384615384615383%

Workflow

local codeMAFFT

No Galaxy historyHugging Face trace

replicate 3

pass

Answer3.5384615384615383%

Workflow

local codeMAFFT

No Galaxy historyHugging Face trace